RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ARHGAP27Q6ZUM4 889 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 BICD2Q8TD16 824 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 JDP2Q8WYK2 163 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 PGBD1Q96JS3 809 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 PRIMPOLQ96LW4 560 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 CTNNA3Q9UI47 895 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 ZNRF3Q9ULT6 936 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 PTPDC1A2A3K4 754 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 EVCP57679 992 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 DIXDC1Q155Q3 683 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 PDCL3Q9H2J4 239 aa18.69■□□□□ 0.58
SQSTM1-213ENST00000510187 MAGEB6P1A0A0J9YX57 407 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 F8W031 263 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 CTAGE5O15320 804 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 AP5Z1O43299 807 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 FKBP1AP62942 108 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 UBE2Q2Q8WVN8 375 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 STRBPQ96SI9 672 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 TTC12Q9H892 705 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 ARMT1Q9H993 441 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 RCOR1Q9UKL0 485 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 UTRNP46939 3433 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 SCN9AQ15858 1988 aa18.68■□□□□ 0.58
SQSTM1-213ENST00000510187 MAST2Q6P0Q8 1798 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 RAD17O75943 681 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 CTDNEP1O95476 244 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 CAMK4Q16566 473 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 LCORLQ8N3X6 602 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 DDX11Q96FC9 970 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 ZNF396Q96N95 335 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 TTF2Q9UNY4 1162 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 CCDC88AQ3V6T2 1871 aa18.67■□□□□ 0.58
SQSTM1-213ENST00000510187 LDHCP07864 332 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 YBX3P16989 372 aaKnown RBP eCLIP18.66■□□□□ 0.584e-6■□□□□ 11.2
SQSTM1-213ENST00000510187 ADD1P35611 737 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 APOBRQ0VD83 1088 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 GLIPR1L2Q4G1C9 344 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 MTERF4Q7Z6M4 381 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 SLF2Q8IX21 1173 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 LRRC2Q9BYS8 371 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 CBX8Q9HC52 389 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 AATFQ9NY61 560 aaKnown RBP eCLIP18.66■□□□□ 0.581e-6■□□□□ 10.1
SQSTM1-213ENST00000510187 MROH7-TTC4A0A0A0MT08 1334 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 NR1I2O75469 434 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 PRELPP51888 382 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 DYNLL1P63167 89 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 ANO6Q4KMQ2 910 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 KIAA0825Q8IV33 1275 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 RGS22Q8NE09 1264 aa18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 RIOK1Q9BRS2 568 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-213ENST00000510187 WDR19Q8NEZ3 1342 aa18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 PSMD14O00487 310 aa18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 APPP05067 770 aa18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 PDIA3P30101 505 aaKnown RBP18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 PLCB2Q00722 1185 aa18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 CKAP2LQ8IYA6 745 aa18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 MYRIPQ8NFW9 859 aa18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 ZNF830Q96NB3 372 aaPredicted RBP18.65■□□□□ 0.58
SQSTM1-213ENST00000510187 FOXP2O15409 715 aa18.64■□□□□ 0.57
SQSTM1-213ENST00000510187 GNAT2P19087 354 aa18.64■□□□□ 0.57
SQSTM1-213ENST00000510187 RSBN1LQ6PCB5 846 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-213ENST00000510187 KIAA1524Q8TCG1 905 aa18.64■□□□□ 0.57
SQSTM1-213ENST00000510187 NOL10Q9BSC4 688 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-213ENST00000510187 SLC4A4Q9Y6R1 1079 aa18.64■□□□□ 0.57
SQSTM1-213ENST00000510187 BAG3O95817 575 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 VIL1P09327 827 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 SCNN1DP51172 638 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 CXCL9Q07325 125 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 IMMTQ16891 758 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 FAM163AQ96GL9 167 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 MYO3BQ8WXR4 1341 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 PATL2C9JE40 543 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 PRKAB2O43741 272 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 LMNB1P20700 586 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 DNTTIP2Q5QJE6 756 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 LUZP1Q86V48 1076 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 PLA2G4DQ86XP0 818 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 KCNF1Q9H3M0 494 aa18.63■□□□□ 0.57
SQSTM1-213ENST00000510187 GAKO14976 1311 aa18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 DHX16O60231 1041 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 FGAP02671 866 aa18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 CDC25BP30305 580 aa18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 GTF2F1P35269 517 aaKnown RBP eCLIP18.62■□□□□ 0.571e-7■■■■□ 24.5
SQSTM1-213ENST00000510187 BTDP43251 543 aa18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 CIAPIN1Q6FI81 312 aa18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 TEKT1Q969V4 418 aa18.62■□□□□ 0.57
SQSTM1-213ENST00000510187 GPR75-ASB3A0A0A6YYF3 556 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 GSG1L2A8MUP6 293 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 ZNF165P49910 485 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 PPP4CP60510 307 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 GPR162Q16538 588 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 CCDC73Q6ZRK6 1079 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 SDR42E1Q8WUS8 393 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 CRNKL1Q9BZJ0 848 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 ZBTB12Q9Y330 459 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 DAGLAQ9Y4D2 1042 aa18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 ZNF646O15015 1829 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-213ENST00000510187 FZD9O00144 591 aa18.6■□□□□ 0.57
SQSTM1-213ENST00000510187 ZNF75DP51815 510 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms