RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 NLRP10Q86W26 655 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 TRMT44Q8IYL2 757 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 C7orf61Q8IZ16 206 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 GREM2Q9H772 168 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 ZHX2Q9Y6X8 837 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 UBR2Q8IWV8 1755 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 THSD7AQ9UPZ6 1657 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 KCNJ6P48051 423 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 CDC37Q16543 378 aaPredicted RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 RGMBQ6NW40 437 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 MAPKAPK5Q8IW41 473 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ANKRD35Q8N283 1001 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SPATA5Q8NB90 893 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SMARCC2Q8TAQ2 1214 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 MICAL1Q8TDZ2 1067 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 LPIN2Q92539 896 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SDF4Q9BRK5 362 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 LRRC4BQ9NT99 713 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 COG6Q9Y2V7 657 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 USP16Q9Y5T5 823 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 GOLGA6L3A6NEY3 463 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 CCER2I3L3R5 266 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 FLOT1O75955 427 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SP4Q02446 784 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ZRSR2Q15696 482 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ABCB5Q2M3G0 1257 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 USH1GQ495M9 461 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ELMSAN1Q6PJG2 1045 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 TRMT1LQ7Z2T5 733 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 RNF41Q9H4P4 317 aaPredicted RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 GPCPD1Q9NPB8 672 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 MSRAQ9UJ68 235 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 CNPY2Q9Y2B0 182 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ATP11BQ9Y2G3 1177 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ZNF213O14771 459 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 HTRA3P83110 453 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 HOMER1Q86YM7 354 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 TRIM22Q8IYM9 498 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 CTNNA3Q9UI47 895 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SCAF8Q9UPN6 1271 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 DLG5Q8TDM6 1919 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 IFIT1BQ5T764 474 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 MFSD6Q6ZSS7 791 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 PABPN1LA6NDY0 278 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 REC8O95072 547 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 PCCAP05165 728 aaPredicted RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SSBP05455 408 aaKnown RBP eCLIP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 PSMA5P28066 241 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 FAM193AP78312 1265 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 RPAINQ86UA6 219 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 SMC5Q8IY18 1101 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 CPXCR1Q8N123 301 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 IPO4Q8TEX9 1081 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 TNPO1Q92973 898 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 KIF1BPQ96EK5 621 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 PHACTR3Q96KR7 559 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 UQCRHLA0A096LP55 91 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 NEURL1BA8MQ27 555 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ALDH1L1O75891 902 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 BAG4O95429 457 aaKnown RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 POTEJP0CG39 1038 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 GNAT2P19087 354 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 IGFBP4P22692 258 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 CDR1P51861 262 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ALDH1L2Q3SY69 923 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 FAM193BQ96PV7 902 aaPredicted RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 PRKRIP1Q9H875 184 aaPredicted RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 IL1RAPL2Q9NP60 686 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ZHX1Q9UKY1 873 aaPredicted RBP3.41□□□□□ -1.86
NEDD4-208ENST00000508342 ZBTB21Q9ULJ3 1066 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 PPP2R3BQ9Y5P8 575 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 NDUFB9Q9Y6M9 179 aa3.41□□□□□ -1.86
NEDD4-208ENST00000508342 NR1I2O75469 434 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 TRAF1Q13077 416 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 KMT5BQ4FZB7 885 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 PANK1Q8TE04 598 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 MXD3Q9BW11 206 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 TDRD3Q9H7E2 651 aaKnown RBP3.4□□□□□ -1.86
NEDD4-208ENST00000508342 MYO6Q9UM54 1294 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 ZNF541Q9H0D2 1346 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 RREB1Q92766 1687 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 CT47B1P0C2W7 299 aaPredicted RBP3.4□□□□□ -1.86
NEDD4-208ENST00000508342 SRGAP2BP0DMP2 458 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 CALM1P0DP23 149 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 CALM2P0DP24 149 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 CALM3P0DP25 149 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 CBX1P83916 185 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 NKX1-1Q15270 411 aaPredicted RBP3.4□□□□□ -1.86
NEDD4-208ENST00000508342 RGS22Q8NE09 1264 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 IL17REQ8NFR9 667 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 FAM200AQ8TCP9 573 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 XAGE2Q96GT9 111 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 ZFP91Q96JP5 570 aaPredicted RBP3.4□□□□□ -1.86
NEDD4-208ENST00000508342 ZC3H4Q9UPT8 1303 aaKnown RBP3.4□□□□□ -1.86
NEDD4-208ENST00000508342 ARFGEF2Q9Y6D5 1785 aa3.4□□□□□ -1.86
NEDD4-208ENST00000508342 PALM3A6NDB9 673 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 ACTN1P12814 892 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 SSTR3P32745 418 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-208ENST00000508342 KIF5BP33176 963 aa3.4□□□□□ -1.87
NEDD4-208ENST00000508342 APBB1IPQ7Z5R6 666 aaPredicted RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms