RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 DDX54Q8TDD1 881 aaKnown RBP5.88□□□□□ -1.47
USP53-204ENST00000507906 TMEM40Q8WWA1 233 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 WNT8BQ93098 351 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 ACSBG1Q96GR2 724 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 BTBD6Q96KE9 485 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 CORO1BQ9BR76 489 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 OSGEPQ9NPF4 335 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 KRT82Q9NSB4 513 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 PCDHB10Q9UN67 800 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 FAM86C2PA6NEL3 165 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 FAM177BA6PVY3 158 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 LILRB5O75023 590 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 DDAH1O94760 285 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 ARHGEF15O94989 841 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 SLURP2P0DP57 97 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 HOXB4P17483 251 aaPredicted RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 CDK11BP21127 795 aaKnown RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 GUCY2CP25092 1073 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 CHMP4BP1P59074 171 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 KIF4BQ2VIQ3 1234 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 TKFCQ3LXA3 575 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 FOXD4L6Q3SYB3 417 aaPredicted RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 FOXD4L3Q6VB84 417 aaPredicted RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 UNC5AQ6ZN44 842 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 CHSY3Q70JA7 882 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 WFDC8Q8IUA0 241 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 DMRTC2Q8IXT2 367 aaPredicted RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 ANKRD13AQ8IZ07 590 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 CACTIN-AS1Q8N1I8 211 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 C19orf47Q8N9M1 422 aaKnown RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 GALNT6Q8NCL4 622 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 EDARADDQ8WWZ3 215 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 USP26Q9BXU7 913 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 NSFL1CQ9UNZ2 370 aaKnown RBP5.87□□□□□ -1.47
USP53-204ENST00000507906 SNCAIPQ9Y6H5 919 aa5.87□□□□□ -1.47
USP53-204ENST00000507906 NID1P14543 1247 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 NME1P15531 152 aaKnown RBP5.86□□□□□ -1.47
USP53-204ENST00000507906 PLCG1P19174 1290 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 POLR2BP30876 1174 aaKnown RBP5.86□□□□□ -1.47
USP53-204ENST00000507906 GRK4P32298 578 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 NTF4P34130 210 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 SRSF11Q05519 484 aaKnown RBP5.86□□□□□ -1.47
USP53-204ENST00000507906 PDE3AQ14432 1141 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 HDXQ7Z353 690 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 JMYQ8N9B5 988 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 UBASH3BQ8TF42 649 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 TM9SF2Q99805 663 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 WDR18Q9BV38 432 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 IFT57Q9NWB7 429 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 ZMYM5Q9UJ78 669 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 GDF2Q9UK05 429 aaPredicted RBP5.86□□□□□ -1.47
USP53-204ENST00000507906 PPP1R9AQ9ULJ8 1098 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 HIF3AQ9Y2N7 669 aa5.86□□□□□ -1.47
USP53-204ENST00000507906 AOC2O75106 756 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 CELA2BP08218 269 aaPredicted RBP5.85□□□□□ -1.47
USP53-204ENST00000507906 ARL4DP49703 201 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 PTPROQ16827 1216 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 ARSHQ5FYA8 562 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 PPM1JQ5JR12 505 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 TMEM201Q5SNT2 666 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 UBE3DQ7Z6J8 389 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 KLHL6Q8WZ60 621 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 ACSF2Q96CM8 615 aaPredicted RBP5.85□□□□□ -1.47
USP53-204ENST00000507906 CNNM2Q9H8M5 875 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 TMEM260Q9NX78 707 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 GMIPQ9P107 970 aa5.85□□□□□ -1.47
USP53-204ENST00000507906 KDM2BQ8NHM5 1336 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 PRAMEF27A3QJZ7 478 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 DLL1O00548 723 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 CDC45O75419 566 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 WISP1O95388 367 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 FAM153BP0C7A2 387 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 GYS2P54840 703 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 LRRFIP1Q32MZ4 808 aaKnown RBP5.84□□□□□ -1.47
USP53-204ENST00000507906 MTERF2Q49AM1 385 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 CDCP2Q5VXM1 449 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 FAM117BQ6P1L5 589 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 NLRC3Q7RTR2 1065 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 KIAA0907Q7Z7F0 614 aaPredicted RBP5.84□□□□□ -1.47
USP53-204ENST00000507906 TAB3Q8N5C8 712 aaPredicted RBP5.84□□□□□ -1.47
USP53-204ENST00000507906 ELMO3Q96BJ8 720 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 FBRSQ9HAH7 460 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 PRDM6Q9NQX0 595 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 TJP2Q9UDY2 1190 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 KLHL3Q9UH77 587 aa5.84□□□□□ -1.47
USP53-204ENST00000507906 CNTNAP5Q8WYK1 1306 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 TNFRSF10CO14798 259 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 PPP1R12AO14974 1030 aaPredicted RBP5.83□□□□□ -1.48
USP53-204ENST00000507906 OIP5O43482 229 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 PGRP06401 933 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 IFRD2Q12894 506 aaPredicted RBP5.83□□□□□ -1.48
USP53-204ENST00000507906 C21orf62-AS1Q17RA5 79 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 C2orf27AQ580R0 203 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 INTS3Q68E01 1043 aaKnown RBP5.83□□□□□ -1.48
USP53-204ENST00000507906 FILIP1Q7Z7B0 1213 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 KLHL23Q8NBE8 558 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 WNT10AQ9GZT5 417 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 DISC1Q9NRI5 854 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 TACC3Q9Y6A5 838 aa5.83□□□□□ -1.48
USP53-204ENST00000507906 PTCH2Q9Y6C5 1203 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms