RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 CTAGE4Q8IX94 777 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 TRIML1Q8N9V2 468 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 VIPAS39Q9H9C1 493 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 TMEM94Q12767 1356 aa19.47■□□□□ 0.71
SQSTM1-211ENST00000506690 TEX33O43247 280 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 PHACTR2O75167 634 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 TFRCP02786 760 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 ATP2B1P20020 1258 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 PBX1P40424 430 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 AARSP49588 968 aaKnown RBP eCLIP19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 ZNF790Q6PG37 636 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 SLC35F6Q8N357 371 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 KRI1Q8N9T8 703 aaKnown RBP19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 PRR29P0C7W0 189 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 LMBR1LQ6UX01 489 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 EFCAB13Q8IY85 973 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 SLIT3O75094 1523 aa19.46■□□□□ 0.71
SQSTM1-211ENST00000506690 A0A087WZG4 1122 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 FECHP22830 423 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 ERCC5P28715 1186 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 ZNF827Q17R98 1081 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 SLC9C2Q5TAH2 1124 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 RALYLQ86SE5 291 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 IGSF22Q8N9C0 903 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 TTF2Q9UNY4 1162 aaKnown RBP19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 CDKL5O76039 1030 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 PLCD1P51178 756 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 LMOD2Q6P5Q4 547 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 PPFIBP1Q86W92 1011 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 NAPGQ99747 312 aaPredicted RBP19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 ARFGEF2Q9Y6D5 1785 aa19.45■□□□□ 0.7
SQSTM1-211ENST00000506690 MFAP3LO75121 409 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 PRPF6O94906 941 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 SYF2O95926 243 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 SUGP1Q8IWZ8 645 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 STK11IPQ8N1F8 1099 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 NOA1Q8NC60 698 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 RNF40O75150 1001 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 FOXO4P98177 505 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 SLC39A6Q13433 755 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 SPECC1Q5M775 1068 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 SPATA20Q8TB22 786 aa19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 CDC5LQ99459 802 aaKnown RBP19.44■□□□□ 0.7
SQSTM1-211ENST00000506690 METAP2P50579 478 aaKnown RBP eCLIP19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 MYO1AQ9UBC5 1043 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 KDM4FA0A1W2PPD8 638 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 ANKRD65E5RJM6 399 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 IL15P40933 162 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 AMPD2Q01433 879 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 CTCFLQ8NI51 663 aaPredicted RBP19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 AFAP1L1Q8TED9 768 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 NCAPGQ9BPX3 1015 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 ADD3Q9UEY8 706 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 SERTAD1Q9UHV2 236 aa19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 ANGEL1Q9UNK9 670 aaKnown RBP19.43■□□□□ 0.7
SQSTM1-211ENST00000506690 ATP5J2-PTCD1G3V325 749 aa19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 POLR2DO15514 142 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 PTCD1O75127 700 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 DNAJC21Q5F1R6 531 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 KCNH5Q8NCM2 988 aa19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 CCDC51Q96ER9 411 aa19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 ABL1P00519 1130 aa19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 CT47A1Q5JQC4 288 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 CPLX3Q8WVH0 158 aa19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 PHKBQ93100 1093 aa19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 FBXO2Q9UK22 296 aaPredicted RBP19.42■□□□□ 0.7
SQSTM1-211ENST00000506690 ZNF213O14771 459 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 ZFYP08048 801 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 PTPREP23469 700 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 ARHGAP25P42331 645 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 GRIN1Q05586 938 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 NTRK3Q16288 839 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 TADA2BQ86TJ2 420 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 CNGA4Q8IV77 575 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 PLEKHA4Q9H4M7 779 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 ZC3H4Q9UPT8 1303 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 CAMTA1Q9Y6Y1 1673 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 A0A087WUV0 522 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 CASP14P31944 242 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 HSPA2P54652 639 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 TRDNQ13061 729 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 SPATA1Q5VX52 437 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 ACRBPQ8NEB7 543 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 DRC1Q96MC2 740 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 DEF6Q9H4E7 631 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 SEC31BQ9NQW1 1179 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 MYO6Q9UM54 1294 aa19.41■□□□□ 0.7
SQSTM1-211ENST00000506690 GYPCP04921 128 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 WASHC4Q2M389 1173 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 CDKAL1Q5VV42 579 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 CPLX2Q6PUV4 134 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 GRAMD1CQ8IYS0 662 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 WWC3Q9ULE0 1092 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 MYH8P13535 1937 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 ACTN4O43707 911 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 TOB1P50616 345 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 TRIM29Q14134 588 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 KANK3Q6NY19 840 aa19.4■□□□□ 0.7
SQSTM1-211ENST00000506690 APOA5Q6Q788 366 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms