RNA–Protein interactions for RNA: ENST00000504227.5

CYSTM1-202, Transcript of cysteine rich transmembrane module containing 1, humanhuman

TSL 5

Gene CYSTM1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CYSTM1-202ENST00000504227 E7EWF7 191 aa16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 PCP11498 1178 aaKnown RBP16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 PSMA5P28066 241 aa16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 STAG1Q8WVM7 1258 aa16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 NBPF3Q9H094 633 aa16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 EHD4Q9H223 541 aa16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 GPBP1L1Q9HC44 474 aaPredicted RBP16.41■□□□□ 0.22
CYSTM1-202ENST00000504227 FOCADQ5VW36 1801 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 NAV1Q8NEY1 1877 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 SUPT20HL1Q3ZLR7 823 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 C16orf86Q6ZW13 317 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 CDC37L1Q7L3B6 337 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 RALYLQ86SE5 291 aaKnown RBP16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 USP48Q86UV5 1035 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 LDHDQ86WU2 507 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 TBC1D10CQ8IV04 446 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 DYNLL2Q96FJ2 89 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 KRT23Q9C075 422 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 CNNM2Q9H8M5 875 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 MKNK2Q9HBH9 465 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 TOMM22Q9NS69 142 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 SWAP70Q9UH65 585 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 TAF6LQ9Y6J9 622 aa16.4■□□□□ 0.22
CYSTM1-202ENST00000504227 SMIM22K7EJ46 135 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 FGRP09769 529 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 CDK8P49336 464 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 EVX2Q03828 476 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 NCOA7Q8NI08 942 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 IL17RAQ96F46 866 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 JAKMIP1Q96N16 626 aaKnown RBP16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 TEPSINQ96N21 525 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 NEK1Q96PY6 1258 aa16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 HERC5Q9UII4 1024 aaKnown RBP16.39■□□□□ 0.21
CYSTM1-202ENST00000504227 ROBO3Q96MS0 1386 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 POLR2AP24928 1970 aaKnown RBP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 ORC4O43929 436 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 TBC1D12O60347 775 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 HMGB1P09429 215 aaKnown RBP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 POTEIP0CG38 1075 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 POTEJP0CG39 1038 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 NT5C2P49902 561 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 GABPAQ06546 454 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 RRP12Q5JTH9 1297 aaKnown RBP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 STOX1Q6ZVD7 989 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 METTL16Q86W50 562 aaKnown RBP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 ZNF444Q8N0Y2 327 aaPredicted RBP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 ESR2Q92731 530 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 TM6SF1Q9BZW5 370 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 INCENPQ9NQS7 918 aa16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.38■□□□□ 0.21
CYSTM1-202ENST00000504227 ADM5C9JUS6 153 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 PRDM1O75626 825 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 YY1P25490 414 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 ADCK5Q3MIX3 580 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 NBPF12Q5TAG4 269 aaPredicted RBP16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 PRAMEF18Q5VWM3 479 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 DCAF15Q66K64 600 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 MAP1SQ66K74 1059 aaPredicted RBP16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 CDAN1Q8IWY9 1227 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 SLC44A5Q8NCS7 719 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 GLIS2Q9BZE0 524 aaPredicted RBP16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 TACC3Q9Y6A5 838 aa16.37■□□□□ 0.21
CYSTM1-202ENST00000504227 RANBP6O60518 1105 aaKnown RBP16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 CASTP20810 708 aaKnown RBP16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 NF2P35240 595 aa16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 RABEP1Q15276 862 aa16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 BLOC1S2Q6QNY1 142 aa16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 MIGA2Q7L4E1 593 aa16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 CYP46A1Q9Y6A2 500 aa16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 NEDD4P46934 1319 aa16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 DDX60LQ5H9U9 1706 aaKnown RBP16.36■□□□□ 0.21
CYSTM1-202ENST00000504227 FAM196BA6NMK8 535 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 B4E1Z4 1266 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 KDM4AO75164 1064 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 MCM5P33992 734 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 SHMT1P34896 483 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 MAP3K10Q02779 954 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 CERKLQ49MI3 558 aaPredicted RBP16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 CHADLQ6NUI6 762 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 DHX32Q7L7V1 743 aaKnown RBP16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 CDCA5Q96FF9 252 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 CCDC17Q96LX7 622 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 KIF2CQ99661 725 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 ZSWIM6Q9HCJ5 1215 aa16.35■□□□□ 0.21
CYSTM1-202ENST00000504227 LAMA4Q16363 1823 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 TSPY2A6NKD2 308 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 RASA1P20936 1047 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 TATDN1Q6P1N9 297 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 RUFY3Q7L099 469 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 IL27Q8NEV9 243 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 ZNF341Q9BYN7 854 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 DNAJC18Q9H819 358 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 ZSWIM5Q9P217 1185 aa16.34■□□□□ 0.21
CYSTM1-202ENST00000504227 LAMB1P07942 1786 aa16.33■□□□□ 0.21
CYSTM1-202ENST00000504227 PRC1O43663 620 aa16.33■□□□□ 0.2
CYSTM1-202ENST00000504227 PPP1R12BO60237 982 aaPredicted RBP16.33■□□□□ 0.2
CYSTM1-202ENST00000504227 TSPY3P0CV98 308 aa16.33■□□□□ 0.2
CYSTM1-202ENST00000504227 TSPY8P0CW00 308 aa16.33■□□□□ 0.2
CYSTM1-202ENST00000504227 SLURP2P0DP57 97 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms