RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 LRRFIP2Q9Y608 721 aaKnown RBP15.9■□□□□ 0.14
LSM6-204ENST00000504181 CHD9Q3L8U1 2897 aa15.9■□□□□ 0.14
LSM6-204ENST00000504181 MRPS5P82675 430 aaKnown RBP15.89■□□□□ 0.13
LSM6-204ENST00000504181 EPHA10Q5JZY3 1008 aa15.89■□□□□ 0.13
LSM6-204ENST00000504181 CHMP4AQ9BY43 222 aa15.89■□□□□ 0.13
LSM6-204ENST00000504181 PUS3Q9BZE2 481 aaKnown RBP15.89■□□□□ 0.13
LSM6-204ENST00000504181 DAGLAQ9Y4D2 1042 aa15.89■□□□□ 0.13
LSM6-204ENST00000504181 XIRP2A4UGR9 3374 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 XRCC5P13010 732 aaKnown RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 DNAJB2P25686 324 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 CAVIN4Q5BKX8 364 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 ALYREFQ86V81 257 aaKnown RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 TRMT44Q8IYL2 757 aaKnown RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 PROCA1Q8NCQ7 364 aaPredicted RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 LINS1Q8NG48 757 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 SOCS4Q8WXH5 440 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 SNX27Q96L92 541 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 RNPC3Q96LT9 517 aaKnown RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 NECAB3Q96P71 396 aaPredicted RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 ASCC2Q9H1I8 757 aaPredicted RBP15.88■□□□□ 0.13
LSM6-204ENST00000504181 SUGT1Q9Y2Z0 365 aa15.88■□□□□ 0.13
LSM6-204ENST00000504181 PEX10O60683 326 aa15.87■□□□□ 0.13
LSM6-204ENST00000504181 DIXDC1Q155Q3 683 aa15.87■□□□□ 0.13
LSM6-204ENST00000504181 POTEEQ6S8J3 1075 aa15.87■□□□□ 0.13
LSM6-204ENST00000504181 DNAAF4Q8WXU2 420 aa15.87■□□□□ 0.13
LSM6-204ENST00000504181 LRFN3Q9BTN0 628 aa15.87■□□□□ 0.13
LSM6-204ENST00000504181 MORF4L1Q9UBU8 362 aa15.87■□□□□ 0.13
LSM6-204ENST00000504181 CTNND1O60716 968 aaKnown RBP15.86■□□□□ 0.13
LSM6-204ENST00000504181 PABPC4Q13310 644 aaKnown RBP eCLIP15.86■□□□□ 0.131e-8■■■■■ 73.4
LSM6-204ENST00000504181 CCER1Q8TC90 406 aaPredicted RBP15.86■□□□□ 0.13
LSM6-204ENST00000504181 GAS2L1Q99501 681 aaPredicted RBP15.86■□□□□ 0.13
LSM6-204ENST00000504181 ZNF576Q9H609 170 aa15.86■□□□□ 0.13
LSM6-204ENST00000504181 USP40Q9NVE5 1235 aa15.86■□□□□ 0.13
LSM6-204ENST00000504181 CDK5RAP2Q96SN8 1893 aa15.86■□□□□ 0.13
LSM6-204ENST00000504181 RGS3P49796 1198 aa15.85■□□□□ 0.13
LSM6-204ENST00000504181 HMGCS2P54868 508 aa15.85■□□□□ 0.13
LSM6-204ENST00000504181 CCDC85BQ15834 202 aaPredicted RBP15.85■□□□□ 0.13
LSM6-204ENST00000504181 SH3RF1Q7Z6J0 888 aa15.85■□□□□ 0.13
LSM6-204ENST00000504181 ZSCAN29Q8IWY8 852 aaPredicted RBP15.85■□□□□ 0.13
LSM6-204ENST00000504181 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
LSM6-204ENST00000504181 PDLIM7Q9NR12 457 aa15.85■□□□□ 0.13
LSM6-204ENST00000504181 DNM1LO00429 736 aa15.84■□□□□ 0.13
LSM6-204ENST00000504181 RGS2P41220 211 aa15.84■□□□□ 0.13
LSM6-204ENST00000504181 FLIIQ13045 1269 aa15.84■□□□□ 0.13
LSM6-204ENST00000504181 SPP2Q13103 211 aa15.84■□□□□ 0.13
LSM6-204ENST00000504181 FKBP5Q13451 457 aaPredicted RBP15.84■□□□□ 0.13
LSM6-204ENST00000504181 SH3BP5LQ7L8J4 393 aa15.84■□□□□ 0.13
LSM6-204ENST00000504181 LRRC37A2A6NM11 1700 aa15.83■□□□□ 0.13
LSM6-204ENST00000504181 CNGA1P29973 690 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 ZEB1P37275 1124 aaPredicted RBP15.83■□□□□ 0.12
LSM6-204ENST00000504181 TRIM60Q495X7 471 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 SLC39A5Q6ZMH5 540 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 USP6NLQ92738 828 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 APBA2Q99767 749 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 DDX20Q9UHI6 824 aaKnown RBP15.83■□□□□ 0.12
LSM6-204ENST00000504181 MROH5Q6ZUA9 1318 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 SMCHD1A6NHR9 2005 aa15.83■□□□□ 0.12
LSM6-204ENST00000504181 TRIM43BA6NCK2 446 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 DDTLA6NHG4 134 aaPredicted RBP15.82■□□□□ 0.12
LSM6-204ENST00000504181 EPHB4P54760 987 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 MAP3K10Q02779 954 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 CALD1Q05682 793 aaKnown RBP15.82■□□□□ 0.12
LSM6-204ENST00000504181 AKNAD1Q5T1N1 836 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 GJC2Q5T442 439 aaPredicted RBP15.82■□□□□ 0.12
LSM6-204ENST00000504181 LPAR1Q92633 364 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 TRIM43Q96BQ3 446 aaPredicted RBP15.82■□□□□ 0.12
LSM6-204ENST00000504181 PRDM12Q9H4Q4 367 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 EPHX3Q9H6B9 360 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 TXNRD2Q9NNW7 524 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 CHD7Q9P2D1 2997 aa15.82■□□□□ 0.12
LSM6-204ENST00000504181 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.81■□□□□ 0.12
LSM6-204ENST00000504181 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.81■□□□□ 0.12
LSM6-204ENST00000504181 PRDX5P30044 214 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 IRX3P78415 501 aaPredicted RBP15.81■□□□□ 0.12
LSM6-204ENST00000504181 WDR43Q15061 677 aaKnown RBP eCLIP15.81■□□□□ 0.12
LSM6-204ENST00000504181 MORN1Q5T089 497 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 GPR142Q7Z601 462 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 CCAR1Q8IX12 1150 aaKnown RBP15.81■□□□□ 0.12
LSM6-204ENST00000504181 ZNF280CQ8ND82 737 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 GPRC5AQ8NFJ5 357 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 TIFAQ96CG3 184 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 PORCNQ9H237 461 aa15.81■□□□□ 0.12
LSM6-204ENST00000504181 SIPA1L1O43166 1804 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 TRANK1O15050 2925 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 RFX7Q2KHR2 1363 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 FAM196BA6NMK8 535 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 ENTPD3O75355 529 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 ITGB8P26012 769 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 MAPK4P31152 587 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 METTL24Q5JXM2 366 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 WDR66Q8TBY9 1149 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 P2RX7Q99572 595 aaKnown RBP15.8■□□□□ 0.12
LSM6-204ENST00000504181 FLRT1Q9NZU1 646 aa15.8■□□□□ 0.12
LSM6-204ENST00000504181 ZNFX1Q9P2E3 1918 aaKnown RBP15.8■□□□□ 0.12
LSM6-204ENST00000504181 MSCO60682 206 aa15.79■□□□□ 0.12
LSM6-204ENST00000504181 LRRC24Q50LG9 513 aa15.79■□□□□ 0.12
LSM6-204ENST00000504181 TMEM31Q5JXX7 168 aa15.79■□□□□ 0.12
LSM6-204ENST00000504181 MFSD14CQ5VZR4 134 aa15.79■□□□□ 0.12
LSM6-204ENST00000504181 PLEKHH3Q7Z736 793 aa15.79■□□□□ 0.12
LSM6-204ENST00000504181 TSR2Q969E8 191 aaKnown RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms