RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CTNND2Q9UQB3 1225 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 FBXO18Q8NFZ0 1043 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 AATFQ9NY61 560 aaKnown RBP eCLIP12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 KCNJ14Q9UNX9 436 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 TDRD7Q8NHU6 1098 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 AXIN2Q9Y2T1 843 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 POLR3GO15318 223 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 AKR1B10O60218 316 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 RBM6P78332 1123 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 CCNL1Q9UK58 526 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 ASAP1Q9ULH1 1129 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 SPATA31A3Q5VYP0 1347 aa12.18□□□□□ -0.46
LIMCH1-205ENST00000503057 TBCAO75347 108 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 KIAA0754O94854 1291 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 LZTS2Q9BRK4 669 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 CYP27B1O15528 508 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 ADD2P35612 726 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 TNS3Q68CZ2 1445 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 KRT86O43790 486 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 IFI16Q16666 785 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 SPECC1Q5M775 1068 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 TEX11Q8IYF3 940 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 ZNF622Q969S3 477 aaKnown RBP eCLIP12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 ZSCAN10Q96SZ4 725 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 ZSWIM4Q9H7M6 989 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 POLR3EQ9NVU0 708 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 PRDM1O75626 825 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 PCP11498 1178 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 PHKA1P46020 1223 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 CETN1Q12798 172 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 PNOCQ13519 176 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 IGSF22Q8N9C0 903 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 ALDH8A1Q9H2A2 487 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 JAG2Q9Y219 1238 aa12.17□□□□□ -0.46
LIMCH1-205ENST00000503057 F8W031 263 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 RESTQ13127 1097 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 EPHA10Q5JZY3 1008 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 CENPHQ9H3R5 247 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 ERVV-1B6SEH8 477 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 ADD1P35611 737 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 ZC3H12CQ9C0D7 883 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 OGFRQ9NZT2 677 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 LUC7L2Q9Y383 392 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 CLIC4Q9Y696 253 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 SHPRHQ149N8 1683 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 PPP6R2O75170 966 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 NDUFA8P51970 172 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 TCERG1LQ5VWI1 586 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 FANCBQ8NB91 859 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 XPO4Q9C0E2 1151 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 V9GYY5 206 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 UBAP1LF5GYI3 381 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 ARHGAP6O43182 974 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 KARSQ15046 597 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 ENOX2Q16206 610 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 LZTFL1Q9NQ48 299 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 CALCOCO1Q9P1Z2 691 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 RCOR1Q9UKL0 485 aa12.16□□□□□ -0.46
LIMCH1-205ENST00000503057 UFL1O94874 794 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 BCAMP50895 628 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 CHRNDQ07001 517 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 PAK1Q13153 545 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TUBB2AQ13885 445 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TOB2Q14106 344 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 NLRP10Q86W26 655 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TUBB2BQ9BVA1 445 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 SAP30BPQ9UHR5 308 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 NFE2L3Q9Y4A8 694 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TACC1O75410 805 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 CYP2E1P05181 493 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 SV2BQ7L1I2 683 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 OSBP2Q969R2 916 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 POTEJP0CG39 1038 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TNNI2P48788 182 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 ZNF569Q5MCW4 686 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 IFT172Q9UG01 1749 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 DDAH1O94760 285 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TRIML1Q8N9V2 468 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TFCP2L1Q9NZI6 479 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 VPS54Q9P1Q0 977 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 GGA1Q9UJY5 639 aa12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 TTF2Q9UNY4 1162 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-205ENST00000503057 NCOA3Q9Y6Q9 1424 aa12.15□□□□□ -0.47
LIMCH1-205ENST00000503057 KIF5AQ12840 1032 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 LETM2Q2VYF4 491 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 EYA3Q99504 573 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 TSPYL1Q9H0U9 437 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 ZDHHC9Q9Y397 364 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 TUBBP07437 444 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CCDC172P0C7W6 258 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 RPS8P62241 208 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 SLC39A14Q15043 492 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 KRT25Q7Z3Z0 450 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 TIGD1Q96MW7 591 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 TSGA10Q9BZW7 698 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 SERTAD1Q9UHV2 236 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 SHTN1A0MZ66 631 aa12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CCT6AP40227 531 aaKnown RBP12.14□□□□□ -0.47
LIMCH1-205ENST00000503057 CNNM4Q6P4Q7 775 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms