RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 PDE6AP16499 860 aa13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 CAP2P40123 477 aa13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 HDAC1Q13547 482 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 PRRT2Q7Z6L0 340 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 ANKRD23Q86SG2 305 aa13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 ADGRA2Q96PE1 1338 aa13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 SALL3Q9BXA9 1300 aa13.26□□□□□ -0.29
SHROOM3-210ENST00000497440 PTPRFP10586 1907 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 SMARCA5O60264 1052 aaPredicted RBP13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 TLR2O60603 784 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 ADD2P35612 726 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 DGKZQ13574 1117 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 UBE3CQ15386 1083 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 SLC9C2Q5TAH2 1124 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 TATDN1Q6P1N9 297 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 C17orf99Q6UX52 265 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 EDC3Q96F86 508 aaKnown RBP13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 TBC1D2Q9BYX2 928 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 EHD4Q9H223 541 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 ECHDC1Q9NTX5 307 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 GINM1Q9NU53 330 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 PAG1Q9NWQ8 432 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 TAOK2Q9UL54 1235 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 SLC45A1Q9Y2W3 748 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 ZHX2Q9Y6X8 837 aa13.25□□□□□ -0.29
SHROOM3-210ENST00000497440 APBB1O00213 710 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 GOLIM4O00461 696 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 JAG1P78504 1218 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 GABPAQ06546 454 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 SH3D19Q5HYK7 790 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 MAPKAPK5Q8IW41 473 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 ZSCAN29Q8IWY8 852 aaPredicted RBP13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 CRBNQ96SW2 442 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 NOL10Q9BSC4 688 aaKnown RBP13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 WDR18Q9BV38 432 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 BOLA2Q9H3K6 86 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 PALD1Q9ULE6 856 aa13.24□□□□□ -0.29
SHROOM3-210ENST00000497440 TNRC18O15417 2968 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-210ENST00000497440 DOCK1Q14185 1865 aa13.23□□□□□ -0.29
SHROOM3-210ENST00000497440 ZNF532Q9HCE3 1301 aa13.23□□□□□ -0.29
SHROOM3-210ENST00000497440 SP3Q02447 781 aa13.23□□□□□ -0.29
SHROOM3-210ENST00000497440 MIGA1Q8NAN2 632 aa13.23□□□□□ -0.29
SHROOM3-210ENST00000497440 ZFYVE28Q9HCC9 887 aa13.23□□□□□ -0.29
SHROOM3-210ENST00000497440 DDX60LQ5H9U9 1706 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-210ENST00000497440 FAM196BA6NMK8 535 aa13.22□□□□□ -0.29
SHROOM3-210ENST00000497440 FBXO46Q6PJ61 603 aaPredicted RBP13.22□□□□□ -0.29
SHROOM3-210ENST00000497440 FASTKD5Q7L8L6 764 aaKnown RBP13.22□□□□□ -0.29
SHROOM3-210ENST00000497440 PI4K2BQ8TCG2 481 aa13.22□□□□□ -0.29
SHROOM3-210ENST00000497440 PICK1Q9NRD5 415 aa13.22□□□□□ -0.29
SHROOM3-210ENST00000497440 TTC41PQ6P2S7 1318 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 MAGEB6P1A0A0J9YX57 407 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 PDHXO00330 501 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 CHGBP05060 677 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 ASNSP08243 561 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 BCRP11274 1271 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 PLCD1P51178 756 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 TAF1CQ15572 869 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 OTOP1Q7RTM1 612 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 SMC5Q8IY18 1101 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 KBTBD3Q8NAB2 608 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 YTHDC1Q96MU7 727 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 DNAJC2Q99543 621 aaKnown RBP13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 DCP1AQ9NPI6 582 aaPredicted RBP13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 STAP2Q9UGK3 403 aa13.21□□□□□ -0.29
SHROOM3-210ENST00000497440 MYH1P12882 1939 aa13.21□□□□□ -0.3
SHROOM3-210ENST00000497440 KIAA0100Q14667 2235 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 SLFNL1Q499Z3 407 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 LCORLQ8N3X6 602 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 PROCA1Q8NCQ7 364 aaPredicted RBP13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 ZNF280CQ8ND82 737 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 GCC1Q96CN9 775 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 ERO1AQ96HE7 468 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 ATP8A2Q9NTI2 1148 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 SERPINB13Q9UIV8 391 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 HPS5Q9UPZ3 1129 aa13.2□□□□□ -0.3
SHROOM3-210ENST00000497440 USP17L5A8MUK1 530 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 SHMT1P34896 483 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 SPP2Q13103 211 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 TTC6Q86TZ1 520 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 CCDC84Q86UT8 332 aaPredicted RBP13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 TICAM2Q86XR7 235 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 OTUD7AQ8TE49 926 aaPredicted RBP13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 CRNKL1Q9BZJ0 848 aaKnown RBP13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 PTPN22Q9Y2R2 807 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 MYH7P12883 1935 aa13.19□□□□□ -0.3
SHROOM3-210ENST00000497440 ATAD5Q96QE3 1844 aa13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 GNRH1P01148 92 aa13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 HLA-DOAP06340 250 aa13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 CTGFP29279 349 aa13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 HOXA7P31268 230 aaPredicted RBP13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 BACE1P56817 501 aa13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 LACTBP83111 547 aaPredicted RBP13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 SHROOM1Q2M3G4 852 aaPredicted RBP13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 CD99L2Q8TCZ2 262 aa13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 STRBPQ96SI9 672 aaKnown RBP13.18□□□□□ -0.3
SHROOM3-210ENST00000497440 PUS7LQ9H0K6 701 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms