RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	NNT	Q13423	1086 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	HSP90AB2P	Q58FF8	381 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	TRAPPC3L	Q5T215	181 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	MEI1	Q5TIA1	1274 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	MCF2L2	Q86YR7	1114 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	ZNF654	Q8IZM8	581 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	EPS8L3	Q8TE67	593 aa	Known RBP	5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	ITPKC	Q96DU7	683 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	ZIC5	Q96T25	663 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	TAF1D	Q9H5J8	278 aa	Predicted RBP	5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	C12orf49	Q9H741	205 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	SPG7	Q9UQ90	795 aa		5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	TNRC6C	Q9HCJ0	1690 aa	Known RBP	5.82	□□□□□ -1.48
VPS52-222	ENST00000495981	SIPA1L3	O60292	1781 aa	Predicted RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	POLRMT	O00411	1230 aa	Known RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	DLL1	O00548	723 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	CPNE3	O75131	537 aa	Known RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	TNFRSF21	O75509	655 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	GRN	P28799	593 aa	Known RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	GJA8	P48165	433 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	AMPH	P49418	695 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	FXR1	P51114	621 aa	Known RBP eCLIP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	GRM1	Q13255	1194 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	TRIP4	Q15650	581 aa	Predicted RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	C8orf34	Q49A92	452 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	MAP1S	Q66K74	1059 aa	Predicted RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	ERMP1	Q7Z2K6	904 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	USP48	Q86UV5	1035 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	LDHD	Q86WU2	507 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	ZNF280C	Q8ND82	737 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	RHBDD1	Q8TEB9	315 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	CCDC74A	Q96AQ1	378 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	CAPNS2	Q96L46	248 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	GPR101	Q96P66	508 aa	Predicted RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	NIFK	Q9BYG3	293 aa	Known RBP	5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	ATG3	Q9NT62	314 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	INPP5F	Q9Y2H2	1132 aa		5.81	□□□□□ -1.48
VPS52-222	ENST00000495981	TGFBR3L	H3BV60	316 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	MEN1	O00255	615 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	RGS20	O76081	388 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	TM4SF1	P30408	202 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	ARID5A	Q03989	594 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	CST9	Q5W186	159 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	XKR5	Q6UX68	686 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	CNTROB	Q8N137	903 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	RAPGEF4	Q8WZA2	1011 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	SMARCC1	Q92922	1105 aa	Predicted RBP	5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	GRIP2	Q9C0E4	1043 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	ZFAND3	Q9H8U3	227 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	USP20	Q9Y2K6	914 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	BCOR	Q6W2J9	1755 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	VCAN	P13611	3396 aa		5.8	□□□□□ -1.48
VPS52-222	ENST00000495981	WASHC2A	Q641Q2	1341 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	AFDN	P55196	1824 aa	Known RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	COL3A1	P02461	1466 aa	Predicted RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	PPM1G	O15355	546 aa	Predicted RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	RPS6KA4	O75676	772 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	PCSK2	P16519	638 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	TAT	P17735	454 aa	Predicted RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	INPP5B	P32019	993 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	GNL2	Q13823	731 aa	Known RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	C4orf17	Q53FE4	359 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	IER5	Q5VY09	327 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	HS2ST1	Q7LGA3	356 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	SUSD3	Q96L08	255 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	CHRD	Q9H2X0	955 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	ZNF395	Q9H8N7	513 aa	Predicted RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	COPRS	Q9NQ92	184 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	ABT1	Q9ULW3	272 aa	Known RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	RTCB	Q9Y3I0	505 aa	Known RBP	5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	KCNMB2	Q9Y691	235 aa		5.79	□□□□□ -1.48
VPS52-222	ENST00000495981	LAMA3	Q16787	3333 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	ARFGEF2	Q9Y6D5	1785 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	TRIOBP	Q9H2D6	2365 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	TLDC2	A0PJX2	215 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	TRAF5	O00463	557 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	SBF1	O95248	1867 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	USP17L7	P0C7H9	530 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	RFC4	P35249	363 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	PLA2G4A	P47712	749 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	ST13	P50502	369 aa	Known RBP	5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	RELB	Q01201	579 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	TAF1C	Q15572	869 aa	Predicted RBP	5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	ANKRD31	Q8N7Z5	1873 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	HSH2D	Q96JZ2	352 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	NLRP3	Q96P20	1036 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	ZFYVE28	Q9HCC9	887 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	DDX21	Q9NR30	783 aa	Known RBP eCLIP	5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	GGT7	Q9UJ14	662 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981		V9GY48	417 aa	Predicted RBP	5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	CARMIL3	Q8ND23	1372 aa		5.78	□□□□□ -1.48
VPS52-222	ENST00000495981	CNTNAP4	Q9C0A0	1308 aa		5.77	□□□□□ -1.49
VPS52-222	ENST00000495981	ZNF541	Q9H0D2	1346 aa		5.77	□□□□□ -1.49
VPS52-222	ENST00000495981	ANKRD62	A6NC57	917 aa		5.77	□□□□□ -1.49
VPS52-222	ENST00000495981	GIPC1	O14908	333 aa		5.77	□□□□□ -1.49
VPS52-222	ENST00000495981	ZIC2	O95409	532 aa	Predicted RBP	5.77	□□□□□ -1.49
VPS52-222	ENST00000495981	ALDH1A1	P00352	501 aa		5.77	□□□□□ -1.49
VPS52-222	ENST00000495981	RPLP1	P05386	114 aa	Known RBP	5.77	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms