RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RAP1GAPP47736 663 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 CDC37L1Q7L3B6 337 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 TMC7Q7Z402 723 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 KCT2Q8NC54 265 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 NECAB3Q96P71 396 aaPredicted RBP8.1□□□□□ -1.11
VPS50-219ENST00000495039 FOXQ1Q9C009 403 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 LMCD1Q9NZU5 365 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 MAPK8IP1Q9UQF2 711 aa8.1□□□□□ -1.11
VPS50-219ENST00000495039 DCDC2CA8MYV0 355 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 TSPAN15O95858 294 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 RING1Q06587 406 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS50-219ENST00000495039 ZBTB37Q5TC79 503 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 UBE3DQ7Z6J8 389 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 LIN37Q96GY3 246 aaPredicted RBP8.09□□□□□ -1.11
VPS50-219ENST00000495039 CEP44Q9C0F1 390 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 GTF3C3Q9Y5Q9 886 aa8.09□□□□□ -1.11
VPS50-219ENST00000495039 PNMA6FA0A0J9YX94 578 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 EOMESO95936 686 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 GLI1P08151 1106 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 GSTT1P30711 240 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 MPRIPQ6WCQ1 1025 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 ARMCX6Q7L4S7 300 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 C12orf40Q86WS4 652 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 C3orf58Q8NDZ4 430 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 GRIN3AQ8TCU5 1115 aa8.08□□□□□ -1.12
VPS50-219ENST00000495039 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.07□□□□□ -1.12
VPS50-219ENST00000495039 BMP6P22004 513 aa8.07□□□□□ -1.12
VPS50-219ENST00000495039 LRRC14Q15048 493 aa8.07□□□□□ -1.12
VPS50-219ENST00000495039 FYB2Q5VWT5 728 aa8.07□□□□□ -1.12
VPS50-219ENST00000495039 MPZL3Q6UWV2 235 aa8.07□□□□□ -1.12
VPS50-219ENST00000495039 TPTE2Q6XPS3 522 aa8.07□□□□□ -1.12
VPS50-219ENST00000495039 KIRREL1Q96J84 757 aa8.07□□□□□ -1.12
VPS50-219ENST00000495039 ENC1O14682 589 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 LRIG2O94898 1065 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 ENOX2Q16206 610 aaKnown RBP8.06□□□□□ -1.12
VPS50-219ENST00000495039 SCARA3Q6AZY7 606 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 LLGL2Q6P1M3 1020 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 CYFIP1Q7L576 1253 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 CILP2Q8IUL8 1156 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 ZSCAN18Q8TBC5 510 aaPredicted RBP8.06□□□□□ -1.12
VPS50-219ENST00000495039 ELMO3Q96BJ8 720 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 SRCIN1Q9C0H9 1055 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 CARS2Q9HA77 564 aaKnown RBP8.06□□□□□ -1.12
VPS50-219ENST00000495039 DCTN4Q9UJW0 460 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 PPM1HQ9ULR3 514 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 PCDHA4Q9UN74 947 aa8.06□□□□□ -1.12
VPS50-219ENST00000495039 SOWAHDA6NJG2 315 aa8.05□□□□□ -1.12
VPS50-219ENST00000495039 FAM155AB1AL88 458 aaPredicted RBP8.05□□□□□ -1.12
VPS50-219ENST00000495039 DSC3Q14574 896 aa8.05□□□□□ -1.12
VPS50-219ENST00000495039 ZNF507Q8TCN5 953 aa8.05□□□□□ -1.12
VPS50-219ENST00000495039 PAGE1O75459 146 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 CFPP27918 469 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 PLCB3Q01970 1234 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 PDE4CQ08493 712 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 TMEM67Q5HYA8 995 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 C22orf34Q6ZV56 151 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 SYDE1Q6ZW31 735 aaPredicted RBP8.04□□□□□ -1.12
VPS50-219ENST00000495039 MFSD4AQ8N468 514 aa8.04□□□□□ -1.12
VPS50-219ENST00000495039 TPX2Q9ULW0 747 aaKnown RBP8.04□□□□□ -1.12
VPS50-219ENST00000495039 TREHO43280 583 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 PRR23BQ6ZRT6 265 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 ANKLE2Q86XL3 938 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 NPAS4Q8IUM7 802 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 LRRC56Q8IYG6 542 aaPredicted RBP8.03□□□□□ -1.12
VPS50-219ENST00000495039 CCDC120Q96HB5 630 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 HSPA12BQ96MM6 686 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 ATP13A1Q9HD20 1204 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 SEMA3GQ9NS98 782 aa8.03□□□□□ -1.12
VPS50-219ENST00000495039 BIN2Q9UBW5 565 aaPredicted RBP8.03□□□□□ -1.12
VPS50-219ENST00000495039 SLITRK5O94991 958 aa8.02□□□□□ -1.13
VPS50-219ENST00000495039 ZNF865P0CJ78 1059 aaPredicted RBP8.02□□□□□ -1.13
VPS50-219ENST00000495039 GDNFP39905 211 aa8.02□□□□□ -1.13
VPS50-219ENST00000495039 SFRP5Q5T4F7 317 aa8.02□□□□□ -1.13
VPS50-219ENST00000495039 FBF1Q8TES7 1133 aa8.02□□□□□ -1.13
VPS50-219ENST00000495039 KRTAP4-2Q9BYR5 136 aa8.02□□□□□ -1.13
VPS50-219ENST00000495039 CYP8B1Q9UNU6 501 aa8.02□□□□□ -1.13
VPS50-219ENST00000495039 PRAMEF27A3QJZ7 478 aa8.01□□□□□ -1.13
VPS50-219ENST00000495039 FBXO24O75426 580 aa8.01□□□□□ -1.13
VPS50-219ENST00000495039 CDKAL1Q5VV42 579 aa8.01□□□□□ -1.13
VPS50-219ENST00000495039 C1QL4Q86Z23 238 aa8.01□□□□□ -1.13
VPS50-219ENST00000495039 ANKRD24Q8TF21 1146 aa8.01□□□□□ -1.13
VPS50-219ENST00000495039 C19orf73Q9NVV2 129 aa8.01□□□□□ -1.13
VPS50-219ENST00000495039 PRR33A8MZF0 331 aa8□□□□□ -1.13
VPS50-219ENST00000495039 NFIBO00712 420 aa8□□□□□ -1.13
VPS50-219ENST00000495039 SIAH1Q8IUQ4 282 aa8□□□□□ -1.13
VPS50-219ENST00000495039 FBXO15Q8NCQ5 510 aaPredicted RBP8□□□□□ -1.13
VPS50-219ENST00000495039 MIPEPQ99797 713 aa8□□□□□ -1.13
VPS50-219ENST00000495039 H3BS24 57 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 MAPK1P28482 360 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 FGD1P98174 961 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 RASIP1Q5U651 963 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 PCNX4Q63HM2 1172 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 ZNF746Q6NUN9 644 aaPredicted RBP7.99□□□□□ -1.13
VPS50-219ENST00000495039 LRFN4Q6PJG9 635 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 HDXQ7Z353 690 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 THAP5Q7Z6K1 395 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 MFSD2AQ8NA29 543 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 RETREG2Q8NC44 543 aa7.99□□□□□ -1.13
VPS50-219ENST00000495039 GIPC1O14908 333 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms