RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 DOCK1Q14185 1865 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 SHTN1A0MZ66 631 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 PRC1O43663 620 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 ENTPD3O75355 529 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 PLCD1P51178 756 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 GABPAQ06546 454 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 DLGAP5Q15398 846 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 Q6ZUG5 572 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 C16orf86Q6ZW13 317 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 TAOK2Q9UL54 1235 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 CNTNAP1P78357 1384 aa14.95□□□□□ -0.02
VPS52-220ENST00000493674 LARGE1O95461 756 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 SLC3A2P08195 630 aaKnown RBP14.94□□□□□ -0.02
VPS52-220ENST00000493674 DDIT3P35638 169 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 RBM5P52756 815 aaKnown RBP eCLIP14.94□□□□□ -0.02
VPS52-220ENST00000493674 AMOTL1Q8IY63 956 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 TMEM87BQ96K49 555 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 ZSCAN31Q96LW9 406 aaPredicted RBP14.94□□□□□ -0.02
VPS52-220ENST00000493674 EHD4Q9H223 541 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 TDRD3Q9H7E2 651 aaKnown RBP14.94□□□□□ -0.02
VPS52-220ENST00000493674 MYOZ2Q9NPC6 264 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 ZSWIM5Q9P217 1185 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 ZNF70Q9UC06 446 aaPredicted RBP14.94□□□□□ -0.02
VPS52-220ENST00000493674 SAP30BPQ9UHR5 308 aaKnown RBP14.94□□□□□ -0.02
VPS52-220ENST00000493674 TPCN1Q9ULQ1 816 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 PLIN4Q96Q06 1357 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 TCHHQ07283 1943 aa14.94□□□□□ -0.02
VPS52-220ENST00000493674 OTOFQ9HC10 1997 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 WNT10BO00744 389 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 SH2B2O14492 632 aaPredicted RBP14.93□□□□□ -0.02
VPS52-220ENST00000493674 KDM4AO75164 1064 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 PDE4BQ07343 736 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 ST3GAL1Q11201 340 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 SH3BP5LQ7L8J4 393 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 METTL16Q86W50 562 aaKnown RBP14.93□□□□□ -0.02
VPS52-220ENST00000493674 IGDCC4Q8TDY8 1250 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 LRRC2Q9BYS8 371 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 GPBP1L1Q9HC44 474 aaPredicted RBP14.93□□□□□ -0.02
VPS52-220ENST00000493674 SH2B1Q9NRF2 756 aaPredicted RBP14.93□□□□□ -0.02
VPS52-220ENST00000493674 PHIPQ8WWQ0 1821 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 NID2Q14112 1375 aa14.93□□□□□ -0.02
VPS52-220ENST00000493674 POLR3DP05423 398 aaPredicted RBP14.92□□□□□ -0.02
VPS52-220ENST00000493674 CACNB3P54284 484 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 PICALMQ13492 652 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 SEC23AQ15436 765 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 ME3Q16798 604 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 CHST3Q7LGC8 479 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 TTC6Q86TZ1 520 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 SGMS1Q86VZ5 419 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 ZFPM1Q8IX07 1006 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 MICALL2Q8IY33 904 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 ESR2Q92731 530 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 BRF1Q92994 677 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 DYNLL2Q96FJ2 89 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 INTS4Q96HW7 963 aaKnown RBP14.92□□□□□ -0.02
VPS52-220ENST00000493674 DHX36Q9H2U1 1008 aaKnown RBP14.92□□□□□ -0.02
VPS52-220ENST00000493674 GPRC5DQ9NZD1 345 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 CNOT7Q9UIV1 285 aaKnown RBP14.92□□□□□ -0.02
VPS52-220ENST00000493674 ANGEL1Q9UNK9 670 aaKnown RBP14.92□□□□□ -0.02
VPS52-220ENST00000493674 GJA3Q9Y6H8 435 aa14.92□□□□□ -0.02
VPS52-220ENST00000493674 GLTPD2A6NH11 291 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 EGFRP00533 1210 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 RASA1P20936 1047 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 LIFRP42702 1097 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 FAM83AQ86UY5 434 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 LY9Q9HBG7 655 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 GPHNQ9NQX3 736 aaPredicted RBP14.91□□□□□ -0.02
VPS52-220ENST00000493674 DAXXQ9UER7 740 aaPredicted RBP14.91□□□□□ -0.02
VPS52-220ENST00000493674 PGAP2Q9UHJ9 254 aa14.91□□□□□ -0.02
VPS52-220ENST00000493674 DDTLA6NHG4 134 aaPredicted RBP14.9□□□□□ -0.02
VPS52-220ENST00000493674 PRDM1O75626 825 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 CDK8P49336 464 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 SLC4A8Q2Y0W8 1093 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 NBPF9Q3BBW0 867 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 RRP12Q5JTH9 1297 aaKnown RBP14.9□□□□□ -0.02
VPS52-220ENST00000493674 DPY19L2Q6NUT2 758 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 NOL8Q76FK4 1167 aaKnown RBP14.9□□□□□ -0.02
VPS52-220ENST00000493674 SLC44A5Q8NCS7 719 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 FAM151AQ8WW52 585 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 ZNF274Q96GC6 653 aaPredicted RBP14.9□□□□□ -0.02
VPS52-220ENST00000493674 LARP6Q9BRS8 491 aaKnown RBP14.9□□□□□ -0.02
VPS52-220ENST00000493674 DNAJC18Q9H819 358 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 TMOD2Q9NZR1 351 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 SWAP70Q9UH65 585 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 SERPINB13Q9UIV8 391 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 PTPRFP10586 1907 aa14.9□□□□□ -0.02
VPS52-220ENST00000493674 CLRN2A0PK11 232 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 PFKFB2O60825 505 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 SHMT1P34896 483 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 APOBRQ0VD83 1088 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 STK11IPQ8N1F8 1099 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 GTF3C6Q969F1 213 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 L3MBTL3Q96JM7 780 aaPredicted RBP14.89□□□□□ -0.03
VPS52-220ENST00000493674 ZNF287Q9HBT7 754 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 SENP2Q9HC62 589 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 TCP11L1Q9NUJ3 509 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 BRPF3Q9ULD4 1205 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 PARP14Q460N5 1801 aa14.89□□□□□ -0.03
VPS52-220ENST00000493674 BAZ2BQ9UIF8 2168 aaKnown RBP14.88□□□□□ -0.03
VPS52-220ENST00000493674 MYO1BO43795 1136 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms