RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 HMG20BQ9P0W2 317 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 HERC5Q9UII4 1024 aaKnown RBP14.21□□□□□ -0.13
COL6A3-213ENST00000493475 AGTPBP1Q9UPW5 1226 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 AFG3L2Q9Y4W6 797 aa14.21□□□□□ -0.13
COL6A3-213ENST00000493475 ATRNL1Q5VV63 1379 aa14.21□□□□□ -0.14
COL6A3-213ENST00000493475 CENPFP49454 3210 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 ARID4AP29374 1257 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-213ENST00000493475 CERS3Q8IU89 383 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 ZFPM1Q8IX07 1006 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 TEX11Q8IYF3 940 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 PROCA1Q8NCQ7 364 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-213ENST00000493475 RNF208Q9H0X6 261 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 RFX7Q2KHR2 1363 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 DOCK2Q92608 1830 aa14.2□□□□□ -0.14
COL6A3-213ENST00000493475 COL2A1P02458 1487 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-213ENST00000493475 ADGRA2Q96PE1 1338 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 DDTLA6NHG4 134 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-213ENST00000493475 GJB1P08034 283 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 BCRP11274 1271 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 GCLCP48506 637 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-213ENST00000493475 PRKCZQ05513 592 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 NAA16Q6N069 864 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-213ENST00000493475 GPAT2Q6NUI2 795 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 DPF3Q92784 378 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 CLUAP1Q96AJ1 413 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 NSUN4Q96CB9 384 aaKnown RBP14.19□□□□□ -0.14
COL6A3-213ENST00000493475 GPR108Q9NPR9 543 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 PI4KBQ9UBF8 816 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 NR2E3Q9Y5X4 410 aa14.19□□□□□ -0.14
COL6A3-213ENST00000493475 MYH2Q9UKX2 1941 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 CCL5P13501 91 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 GJA8P48165 433 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 CAP1Q01518 475 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 MOGSQ13724 837 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 CRACR2BQ8N4Y2 399 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-213ENST00000493475 ZNF280CQ8ND82 737 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 PXYLP1Q8TE99 480 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 DDX4Q9NQI0 724 aaKnown RBP14.18□□□□□ -0.14
COL6A3-213ENST00000493475 TMOD4Q9NZQ9 345 aa14.18□□□□□ -0.14
COL6A3-213ENST00000493475 USP17L5A8MUK1 530 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 ADCY3O60266 1144 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 HLA-DOAP06340 250 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 ASNSP08243 561 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 RHBDL3P58872 404 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 IRF5Q13568 498 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 FAM110CQ1W6H9 321 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 TMED8Q6PL24 325 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-213ENST00000493475 SH3BP5LQ7L8J4 393 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 GINM1Q9NU53 330 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 TAOK2Q9UL54 1235 aa14.17□□□□□ -0.14
COL6A3-213ENST00000493475 SURF6O75683 361 aaKnown RBP14.16□□□□□ -0.14
COL6A3-213ENST00000493475 CAP2P40123 477 aa14.16□□□□□ -0.14
COL6A3-213ENST00000493475 IRX3P78415 501 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-213ENST00000493475 SPP2Q13103 211 aa14.16□□□□□ -0.14
COL6A3-213ENST00000493475 TBC1D9Q6ZT07 1266 aa14.16□□□□□ -0.14
COL6A3-213ENST00000493475 CCAR1Q8IX12 1150 aaKnown RBP14.16□□□□□ -0.14
COL6A3-213ENST00000493475 PNMA6EA0A0J9YXQ4 647 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 BCAR3O75815 825 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 MCAMP43121 646 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 FLT3LGP49771 235 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 MTFR1Q15390 333 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 TNNI3KQ59H18 835 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 ERC1Q8IUD2 1116 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 FOXP4Q8IVH2 680 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-213ENST00000493475 ITPRIPQ8IWB1 547 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 ANKRD13CQ8N6S4 541 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 ZNF579Q8NAF0 562 aaKnown RBP14.15□□□□□ -0.14
COL6A3-213ENST00000493475 U2AF1L4Q8WU68 220 aaKnown RBP14.15□□□□□ -0.14
COL6A3-213ENST00000493475 ZNF512BQ96KM6 892 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-213ENST00000493475 AATFQ9NY61 560 aaKnown RBP eCLIP14.15□□□□□ -0.14
COL6A3-213ENST00000493475 FPGT-TNNI3KV9GXZ4 949 aa14.15□□□□□ -0.14
COL6A3-213ENST00000493475 DOCK1Q14185 1865 aa14.14□□□□□ -0.15
COL6A3-213ENST00000493475 FARP2O94887 1054 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-213ENST00000493475 TFRCP02786 760 aaKnown RBP14.14□□□□□ -0.15
COL6A3-213ENST00000493475 MS4A1P11836 297 aa14.14□□□□□ -0.15
COL6A3-213ENST00000493475 HMGCS2P54868 508 aa14.14□□□□□ -0.15
COL6A3-213ENST00000493475 TMEM57Q8N5G2 664 aa14.14□□□□□ -0.15
COL6A3-213ENST00000493475 GTF3C2Q8WUA4 911 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-213ENST00000493475 MKI67P46013 3256 aaKnown RBP14.14□□□□□ -0.15
COL6A3-213ENST00000493475 BRCA2P51587 3418 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 C19orf81C9J6K1 198 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 SGPL1O95470 568 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 INHAP05111 366 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 CTGFP29279 349 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 PPP4CP60510 307 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 ATP8B2P98198 1209 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 HSP90AB4PQ58FF6 505 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 PI16Q6UXB8 463 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 SSH3Q8TE77 659 aa14.13□□□□□ -0.15
COL6A3-213ENST00000493475 SH3RF3Q8TEJ3 882 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-213ENST00000493475 CWC22Q9HCG8 908 aaKnown RBP14.13□□□□□ -0.15
COL6A3-213ENST00000493475 H0YGN5 161 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 HNRNPUQ00839 825 aaKnown RBP eCLIP14.12□□□□□ -0.15
COL6A3-213ENST00000493475 MAP3K12Q12852 859 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 PDE3AQ14432 1141 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 SH3D19Q5HYK7 790 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 TRMT44Q8IYL2 757 aaKnown RBP14.12□□□□□ -0.15
COL6A3-213ENST00000493475 TGFBRAP1Q8WUH2 860 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 WDR18Q9BV38 432 aa14.12□□□□□ -0.15
COL6A3-213ENST00000493475 SNRKQ9NRH2 765 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms