RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 RC3H2Q9HBD1 1191 aaKnown RBP6.09□□□□□ -1.43
PTCD3-218ENST00000493430 PRDM10Q9NQV6 1147 aa6.09□□□□□ -1.43
PTCD3-218ENST00000493430 MBNL3Q9NUK0 354 aaKnown RBP6.09□□□□□ -1.43
PTCD3-218ENST00000493430 PCDHA4Q9UN74 947 aa6.09□□□□□ -1.43
PTCD3-218ENST00000493430 NTF4P34130 210 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 ZBTB37Q5TC79 503 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 ANGEL2Q5VTE6 544 aaKnown RBP6.08□□□□□ -1.44
PTCD3-218ENST00000493430 FAM214BQ7L5A3 538 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 ELMO3Q96BJ8 720 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 SETDB2Q96T68 719 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 TNKS2Q9H2K2 1166 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 FAM8A1Q9UBU6 413 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 WWC3Q9ULE0 1092 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 IVNS1ABPQ9Y6Y0 642 aa6.08□□□□□ -1.44
PTCD3-218ENST00000493430 C8AP07357 584 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 KCNA1Q09470 495 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 SLC23A3Q6PIS1 610 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 ASB11Q8WXH4 323 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 C12orf49Q9H741 205 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 ADAMTS6Q9UKP5 1117 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 CARMIL2Q6F5E8 1435 aa6.07□□□□□ -1.44
PTCD3-218ENST00000493430 GNAT3A8MTJ3 354 aa6.06□□□□□ -1.44
PTCD3-218ENST00000493430 RASIP1Q5U651 963 aa6.06□□□□□ -1.44
PTCD3-218ENST00000493430 PCNX4Q63HM2 1172 aa6.06□□□□□ -1.44
PTCD3-218ENST00000493430 LRRN4CLQ8ND94 238 aa6.06□□□□□ -1.44
PTCD3-218ENST00000493430 ZNF507Q8TCN5 953 aa6.06□□□□□ -1.44
PTCD3-218ENST00000493430 FRMD6Q96NE9 622 aa6.06□□□□□ -1.44
PTCD3-218ENST00000493430 CELA3AP09093 270 aa6.05□□□□□ -1.44
PTCD3-218ENST00000493430 USP17L7P0C7H9 530 aa6.05□□□□□ -1.44
PTCD3-218ENST00000493430 SV2BQ7L1I2 683 aa6.05□□□□□ -1.44
PTCD3-218ENST00000493430 HDXQ7Z353 690 aa6.05□□□□□ -1.44
PTCD3-218ENST00000493430 UBE3DQ7Z6J8 389 aa6.05□□□□□ -1.44
PTCD3-218ENST00000493430 FAM168AQ92567 244 aa6.05□□□□□ -1.44
PTCD3-218ENST00000493430 PRDM5Q9NQX1 630 aaPredicted RBP6.05□□□□□ -1.44
PTCD3-218ENST00000493430 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.05□□□□□ -1.44
PTCD3-218ENST00000493430 LRIG2O94898 1065 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 LDHBP07195 334 aaKnown RBP6.04□□□□□ -1.44
PTCD3-218ENST00000493430 IKZF1Q13422 519 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 INPP5AQ14642 412 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 NKPD1Q17RQ9 610 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 ARMCX6Q7L4S7 300 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 SPACA3Q8IXA5 215 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 TMEM40Q8WWA1 233 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 TIMELESSQ9UNS1 1208 aa6.04□□□□□ -1.44
PTCD3-218ENST00000493430 KRTAP4-8A0A0G2JLE6 195 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 PRAMEF27A3QJZ7 478 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 EOMESO95936 686 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 P4HBP07237 508 aaKnown RBP6.03□□□□□ -1.44
PTCD3-218ENST00000493430 CLCN7P51798 805 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 ZP2Q05996 745 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 ZNF648Q5T619 568 aaPredicted RBP6.03□□□□□ -1.44
PTCD3-218ENST00000493430 LRFN4Q6PJG9 635 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 CYFIP1Q7L576 1253 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 FOXQ1Q9C009 403 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 TTF2Q9UNY4 1162 aaKnown RBP6.03□□□□□ -1.44
PTCD3-218ENST00000493430 MAPK8IP1Q9UQF2 711 aa6.03□□□□□ -1.44
PTCD3-218ENST00000493430 FARP2O94887 1054 aaPredicted RBP6.02□□□□□ -1.45
PTCD3-218ENST00000493430 SLITRK5O94991 958 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 JAG1P78504 1218 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 PTPN11Q06124 597 aaPredicted RBP6.02□□□□□ -1.45
PTCD3-218ENST00000493430 TTBK2Q6IQ55 1244 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 FLAD1Q8NFF5 587 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 PLPPR2Q96GM1 343 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 WNT10AQ9GZT5 417 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 PRDM7Q9NQW5 492 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 LMCD1Q9NZU5 365 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 SNCAIPQ9Y6H5 919 aa6.02□□□□□ -1.45
PTCD3-218ENST00000493430 FAM155AB1AL88 458 aaPredicted RBP6.01□□□□□ -1.45
PTCD3-218ENST00000493430 EIF4BP23588 611 aaKnown RBP6.01□□□□□ -1.45
PTCD3-218ENST00000493430 CAP2P40123 477 aa6.01□□□□□ -1.45
PTCD3-218ENST00000493430 ETF1P62495 437 aaKnown RBP6.01□□□□□ -1.45
PTCD3-218ENST00000493430 MFSD2AQ8NA29 543 aa6.01□□□□□ -1.45
PTCD3-218ENST00000493430 FBRSQ9HAH7 460 aa6.01□□□□□ -1.45
PTCD3-218ENST00000493430 TPX2Q9ULW0 747 aaKnown RBP6.01□□□□□ -1.45
PTCD3-218ENST00000493430 PITPNM2Q9BZ72 1349 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 PATL2C9JE40 543 aaKnown RBP6□□□□□ -1.45
PTCD3-218ENST00000493430 LMNB1P20700 586 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 GNA15P30679 374 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 RPS26P62854 115 aaKnown RBP6□□□□□ -1.45
PTCD3-218ENST00000493430 FGD1P98174 961 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 SLBPQ14493 270 aaKnown RBP eCLIP6□□□□□ -1.45
PTCD3-218ENST00000493430 SFRP5Q5T4F7 317 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 HID1Q8IV36 788 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 GAL3ST3Q96A11 431 aa6□□□□□ -1.45
PTCD3-218ENST00000493430 PRPF40AO75400 957 aaKnown RBP5.99□□□□□ -1.45
PTCD3-218ENST00000493430 CCDC85BQ15834 202 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-218ENST00000493430 PKN1Q16512 942 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 NKG7Q16617 165 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 WIPI1Q5MNZ9 446 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-218ENST00000493430 ZNF746Q6NUN9 644 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-218ENST00000493430 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.99□□□□□ -1.45
PTCD3-218ENST00000493430 C22orf34Q6ZV56 151 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 ZSWIM9Q86XI8 627 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 KSR1Q8IVT5 923 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 MFSD4AQ8N468 514 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 HSPA12BQ96MM6 686 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 MIPEPQ99797 713 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 FAM53CQ9NYF3 392 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 CTNND2Q9UQB3 1225 aa5.99□□□□□ -1.45
PTCD3-218ENST00000493430 ZNF865P0CJ78 1059 aaPredicted RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms