RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 AK5Q9Y6K8 562 aa5.91□□□□□ -1.46
CPSF3-205ENST00000489629 IGF2BP3O00425 579 aaKnown RBP eCLIP5.9□□□□□ -1.46
CPSF3-205ENST00000489629 JUNBP17275 347 aaPredicted RBP5.9□□□□□ -1.46
CPSF3-205ENST00000489629 EIF4BP23588 611 aaKnown RBP5.9□□□□□ -1.46
CPSF3-205ENST00000489629 PLCL1Q15111 1095 aa5.9□□□□□ -1.46
CPSF3-205ENST00000489629 ZNF792Q3KQV3 632 aa5.9□□□□□ -1.46
CPSF3-205ENST00000489629 ELMO3Q96BJ8 720 aa5.9□□□□□ -1.46
CPSF3-205ENST00000489629 TTF2Q9UNY4 1162 aaKnown RBP5.9□□□□□ -1.46
CPSF3-205ENST00000489629 TMEM265A0A087WTH1 108 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 ANKRD33BA6NCL7 494 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 PAPLNO95428 1278 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 EOMESO95936 686 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 CD96P40200 585 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 AOC3Q16853 763 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 TTBK2Q6IQ55 1244 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.89□□□□□ -1.47
CPSF3-205ENST00000489629 SND1Q7KZF4 910 aaKnown RBP eCLIP5.89□□□□□ -1.47
CPSF3-205ENST00000489629 KCT2Q8NC54 265 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 ZNF507Q8TCN5 953 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 PLPPR2Q96GM1 343 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 HRASLS5Q96KN8 279 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 DUSP9Q99956 384 aaKnown RBP5.89□□□□□ -1.47
CPSF3-205ENST00000489629 SNX11Q9Y5W9 270 aa5.89□□□□□ -1.47
CPSF3-205ENST00000489629 LRIG2O94898 1065 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 CAP2P40123 477 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 CDK8P49336 464 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 RPS26P62854 115 aaKnown RBP5.88□□□□□ -1.47
CPSF3-205ENST00000489629 SLBPQ14493 270 aaKnown RBP eCLIP5.88□□□□□ -1.47
CPSF3-205ENST00000489629 ARHGAP27Q6ZUM4 889 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 CDC37L1Q7L3B6 337 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 ARMCX6Q7L4S7 300 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 SPACA3Q8IXA5 215 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 ASIC4Q96FT7 647 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 WNT10AQ9GZT5 417 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 FBRSQ9HAH7 460 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 PICK1Q9NRD5 415 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 MBNL3Q9NUK0 354 aaKnown RBP5.88□□□□□ -1.47
CPSF3-205ENST00000489629 GTF2IRD1Q9UHL9 959 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 ADAMTS6Q9UKP5 1117 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 SNCAIPQ9Y6H5 919 aa5.88□□□□□ -1.47
CPSF3-205ENST00000489629 SLITRK5O94991 958 aa5.87□□□□□ -1.47
CPSF3-205ENST00000489629 RNASE1P07998 156 aaKnown RBP5.87□□□□□ -1.47
CPSF3-205ENST00000489629 ITIH2P19823 946 aa5.87□□□□□ -1.47
CPSF3-205ENST00000489629 FGD1P98174 961 aa5.87□□□□□ -1.47
CPSF3-205ENST00000489629 NKPD1Q17RQ9 610 aa5.87□□□□□ -1.47
CPSF3-205ENST00000489629 EAPPQ56P03 285 aaPredicted RBP5.87□□□□□ -1.47
CPSF3-205ENST00000489629 DNAJC14Q6Y2X3 702 aaPredicted RBP5.87□□□□□ -1.47
CPSF3-205ENST00000489629 NPAS4Q8IUM7 802 aa5.87□□□□□ -1.47
CPSF3-205ENST00000489629 PCDHB5Q9Y5E4 795 aa5.87□□□□□ -1.47
CPSF3-205ENST00000489629 CARMIL2Q6F5E8 1435 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 CNTNAP4Q9C0A0 1308 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 PRAMEF27A3QJZ7 478 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 GFRA2O00451 464 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 CCDC85BQ15834 202 aaPredicted RBP5.86□□□□□ -1.47
CPSF3-205ENST00000489629 NKG7Q16617 165 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 AGMOQ6ZNB7 445 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 HDXQ7Z353 690 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 FOXQ1Q9C009 403 aa5.86□□□□□ -1.47
CPSF3-205ENST00000489629 DAB2P98082 770 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 SEPT6Q14141 434 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 WIPI1Q5MNZ9 446 aaPredicted RBP5.85□□□□□ -1.47
CPSF3-205ENST00000489629 OGFOD2Q6N063 350 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 ATG4DQ86TL0 474 aaPredicted RBP5.85□□□□□ -1.47
CPSF3-205ENST00000489629 AEBP1Q8IUX7 1158 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 KRTAP9-9Q9BYP9 154 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 KRTAP9-4Q9BYQ2 154 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 PARP2Q9UGN5 583 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 MAPK8IP1Q9UQF2 711 aa5.85□□□□□ -1.47
CPSF3-205ENST00000489629 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.85□□□□□ -1.47
CPSF3-205ENST00000489629 YBX3P16989 372 aaKnown RBP eCLIP5.84□□□□□ -1.47
CPSF3-205ENST00000489629 LIG3P49916 1009 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 MEI1Q5TIA1 1274 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 ANGEL2Q5VTE6 544 aaKnown RBP5.84□□□□□ -1.47
CPSF3-205ENST00000489629 C22orf34Q6ZV56 151 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 HID1Q8IV36 788 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 MFSD2AQ8NA29 543 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 LRRN4CLQ8ND94 238 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 PI4K2BQ8TCG2 481 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 ASB11Q8WXH4 323 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 RC3H2Q9HBD1 1191 aaKnown RBP5.84□□□□□ -1.47
CPSF3-205ENST00000489629 PRDM5Q9NQX1 630 aaPredicted RBP5.84□□□□□ -1.47
CPSF3-205ENST00000489629 TACC3Q9Y6A5 838 aa5.84□□□□□ -1.47
CPSF3-205ENST00000489629 PITPNM2Q9BZ72 1349 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 PRR33A8MZF0 331 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 CST3P01034 146 aaPredicted RBP5.83□□□□□ -1.48
CPSF3-205ENST00000489629 CTSHP09668 335 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 ZNF865P0CJ78 1059 aaPredicted RBP5.83□□□□□ -1.48
CPSF3-205ENST00000489629 TFE3P19532 575 aaPredicted RBP5.83□□□□□ -1.48
CPSF3-205ENST00000489629 CLCN7P51798 805 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 SLC23A3Q6PIS1 610 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 FBXO33Q7Z6M2 555 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 POU5F2Q8N7G0 328 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 RIN3Q8TB24 985 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 SEMA3GQ9NS98 782 aa5.83□□□□□ -1.48
CPSF3-205ENST00000489629 USP31Q70CQ4 1352 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 GNAT3A8MTJ3 354 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 RBAK-RBAKDNI3L0D1 243 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 BIN1O00499 593 aa5.82□□□□□ -1.48
CPSF3-205ENST00000489629 PDIA4P13667 645 aaKnown RBP5.82□□□□□ -1.48
CPSF3-205ENST00000489629 GRK4P32298 578 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms