RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 OTUD7BQ6GQQ9 843 aa20.92■□□□□ 0.94
MDC1-206ENST00000489540 TTC6Q86TZ1 520 aa20.92■□□□□ 0.94
MDC1-206ENST00000489540 METTL16Q86W50 562 aaKnown RBP20.92■□□□□ 0.94
MDC1-206ENST00000489540 SCYL3Q8IZE3 742 aa20.92■□□□□ 0.94
MDC1-206ENST00000489540 LCORLQ8N3X6 602 aa20.92■□□□□ 0.94
MDC1-206ENST00000489540 TRIM34Q9BYJ4 488 aa20.92■□□□□ 0.94
MDC1-206ENST00000489540 MBD4O95243 580 aa20.91■□□□□ 0.94
MDC1-206ENST00000489540 SLFNL1Q499Z3 407 aa20.91■□□□□ 0.94
MDC1-206ENST00000489540 IFNL1Q8IU54 200 aa20.91■□□□□ 0.94
MDC1-206ENST00000489540 MS4A4AQ96JQ5 239 aa20.91■□□□□ 0.94
MDC1-206ENST00000489540 ARMT1Q9H993 441 aa20.91■□□□□ 0.94
MDC1-206ENST00000489540 TSKSQ9UJT2 592 aa20.91■□□□□ 0.94
MDC1-206ENST00000489540 DOCK2Q92608 1830 aa20.9■□□□□ 0.94
MDC1-206ENST00000489540 IRF6O14896 467 aa20.9■□□□□ 0.94
MDC1-206ENST00000489540 SLURP2P0DP57 97 aa20.9■□□□□ 0.94
MDC1-206ENST00000489540 SNAPC2Q13487 334 aa20.9■□□□□ 0.94
MDC1-206ENST00000489540 CRACR2BQ8N4Y2 399 aaPredicted RBP20.9■□□□□ 0.94
MDC1-206ENST00000489540 ATP8A2Q9NTI2 1148 aa20.9■□□□□ 0.94
MDC1-206ENST00000489540 CHGBP05060 677 aa20.89■□□□□ 0.94
MDC1-206ENST00000489540 CETPP11597 493 aa20.89■□□□□ 0.94
MDC1-206ENST00000489540 APPBP2Q92624 585 aa20.89■□□□□ 0.94
MDC1-206ENST00000489540 PUS7LQ9H0K6 701 aaKnown RBP20.89■□□□□ 0.94
MDC1-206ENST00000489540 MYO5AQ9Y4I1 1855 aaKnown RBP20.89■□□□□ 0.93
MDC1-206ENST00000489540 CCL15-CCL14A0A0B4J2E2 113 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 FAM196BA6NMK8 535 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 POLR3DP05423 398 aaPredicted RBP20.88■□□□□ 0.93
MDC1-206ENST00000489540 PTPRAP18433 802 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 CAP2P40123 477 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 CCL15Q16663 113 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 EVI5LQ96CN4 794 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 FSD1Q9BTV5 496 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 EHD4Q9H223 541 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 DCP1AQ9NPI6 582 aaPredicted RBP20.88■□□□□ 0.93
MDC1-206ENST00000489540 MCM9Q9NXL9 1143 aa20.88■□□□□ 0.93
MDC1-206ENST00000489540 CXCL11O14625 94 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 COL13A1Q5TAT6 717 aaPredicted RBP20.87■□□□□ 0.93
MDC1-206ENST00000489540 PLEKHM2Q8IWE5 1019 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 SDR42E1Q8WUS8 393 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 BRI3BPQ8WY22 251 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 DDRGK1Q96HY6 314 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 CFHR5Q9BXR6 569 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 OSBPL3Q9H4L5 887 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 SERPINB13Q9UIV8 391 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 KCNH4Q9UQ05 1017 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 ZHX2Q9Y6X8 837 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 AK9Q5TCS8 1911 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 IGF2BP3O00425 579 aaKnown RBP eCLIP20.87■□□□□ 0.93
MDC1-206ENST00000489540 TBC1D8O95759 1140 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 TICAM2Q86XR7 235 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 OSBP2Q969R2 916 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 STRBPQ96SI9 672 aaKnown RBP20.87■□□□□ 0.93
MDC1-206ENST00000489540 PTPN18Q99952 460 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 GINM1Q9NU53 330 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 SLC4A4Q9Y6R1 1079 aa20.87■□□□□ 0.93
MDC1-206ENST00000489540 PRKAB2O43741 272 aa20.86■□□□□ 0.93
MDC1-206ENST00000489540 TBC1D2Q9BYX2 928 aa20.86■□□□□ 0.93
MDC1-206ENST00000489540 DNAJC18Q9H819 358 aa20.86■□□□□ 0.93
MDC1-206ENST00000489540 TAOK2Q9UL54 1235 aa20.86■□□□□ 0.93
MDC1-206ENST00000489540 PLCD1P51178 756 aa20.85■□□□□ 0.93
MDC1-206ENST00000489540 SLC4A8Q2Y0W8 1093 aa20.85■□□□□ 0.93
MDC1-206ENST00000489540 AFG3L2Q9Y4W6 797 aa20.85■□□□□ 0.93
MDC1-206ENST00000489540 GNAT2P19087 354 aa20.84■□□□□ 0.93
MDC1-206ENST00000489540 RRP1BQ14684 758 aaKnown RBP20.84■□□□□ 0.93
MDC1-206ENST00000489540 NOM1Q5C9Z4 860 aaKnown RBP20.84■□□□□ 0.93
MDC1-206ENST00000489540 AMOTL1Q8IY63 956 aa20.84■□□□□ 0.93
MDC1-206ENST00000489540 ZCCHC17Q9NP64 241 aaKnown RBP20.84■□□□□ 0.93
MDC1-206ENST00000489540 USP17L5A8MUK1 530 aa20.83■□□□□ 0.93
MDC1-206ENST00000489540 ASNSP08243 561 aa20.83■□□□□ 0.93
MDC1-206ENST00000489540 ZMYM1Q5SVZ6 1142 aa20.83■□□□□ 0.93
MDC1-206ENST00000489540 TATDN1Q6P1N9 297 aa20.83■□□□□ 0.93
MDC1-206ENST00000489540 GIMAP6Q6P9H5 292 aa20.83■□□□□ 0.93
MDC1-206ENST00000489540 OTOFQ9HC10 1997 aa20.83■□□□□ 0.92
MDC1-206ENST00000489540 GPAA1O43292 621 aa20.82■□□□□ 0.92
MDC1-206ENST00000489540 GABPAQ06546 454 aa20.82■□□□□ 0.92
MDC1-206ENST00000489540 FASTKD5Q7L8L6 764 aaKnown RBP20.82■□□□□ 0.92
MDC1-206ENST00000489540 AS3MTQ9HBK9 375 aa20.82■□□□□ 0.92
MDC1-206ENST00000489540 TRIM6-TRIM34B2RNG4 842 aa20.81■□□□□ 0.92
MDC1-206ENST00000489540 BTBD19C9JJ37 291 aa20.81■□□□□ 0.92
MDC1-206ENST00000489540 GPR25O00155 361 aa20.81■□□□□ 0.92
MDC1-206ENST00000489540 FAM43AQ8N2R8 423 aa20.81■□□□□ 0.92
MDC1-206ENST00000489540 A0A0G2JLL6 359 aaPredicted RBP20.8■□□□□ 0.92
MDC1-206ENST00000489540 USP17L12C9JPN9 530 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 USP17L21D6R901 530 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 M0R2C6 588 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 CERKLQ49MI3 558 aaPredicted RBP20.8■□□□□ 0.92
MDC1-206ENST00000489540 C12orf60Q5U649 245 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 PRRT2Q7Z6L0 340 aaPredicted RBP20.8■□□□□ 0.92
MDC1-206ENST00000489540 ANKRD23Q86SG2 305 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 ZNF280CQ8ND82 737 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 ZFYVE28Q9HCC9 887 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 SWAP70Q9UH65 585 aa20.8■□□□□ 0.92
MDC1-206ENST00000489540 TRIM75PA6NK02 468 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 GSG1L2A8MUP6 293 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 PATL2C9JE40 543 aaKnown RBP20.79■□□□□ 0.92
MDC1-206ENST00000489540 CYP2D6P10635 497 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 SPP2Q13103 211 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 CRHR2Q13324 411 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 TAF1CQ15572 869 aaPredicted RBP20.79■□□□□ 0.92
MDC1-206ENST00000489540 CTR9Q6PD62 1173 aa20.79■□□□□ 0.92
MDC1-206ENST00000489540 RILPL2Q969X0 211 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms