RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 MOGSQ13724 837 aa25.69■■□□□ 1.7
LIME1-207ENST00000489212 PICK1Q9NRD5 415 aa25.69■■□□□ 1.7
LIME1-207ENST00000489212 PI4KBQ9UBF8 816 aa25.69■■□□□ 1.7
LIME1-207ENST00000489212 SAP30BPQ9UHR5 308 aaKnown RBP25.69■■□□□ 1.7
LIME1-207ENST00000489212 PALD1Q9ULE6 856 aa25.69■■□□□ 1.7
LIME1-207ENST00000489212 ZHX2Q9Y6X8 837 aa25.69■■□□□ 1.7
LIME1-207ENST00000489212 PHIPQ8WWQ0 1821 aa25.69■■□□□ 1.7
LIME1-207ENST00000489212 ZNF532Q9HCE3 1301 aa25.68■■□□□ 1.7
LIME1-207ENST00000489212 TAF1CQ15572 869 aaPredicted RBP25.68■■□□□ 1.7
LIME1-207ENST00000489212 SLFNL1Q499Z3 407 aa25.68■■□□□ 1.7
LIME1-207ENST00000489212 CCDC84Q86UT8 332 aaPredicted RBP25.67■■□□□ 1.7
LIME1-207ENST00000489212 CERS3Q8IU89 383 aa25.67■■□□□ 1.7
LIME1-207ENST00000489212 DNAJC18Q9H819 358 aa25.67■■□□□ 1.7
LIME1-207ENST00000489212 ECHDC1Q9NTX5 307 aa25.67■■□□□ 1.7
LIME1-207ENST00000489212 HERC5Q9UII4 1024 aaKnown RBP25.67■■□□□ 1.7
LIME1-207ENST00000489212 AFG3L2Q9Y4W6 797 aa25.67■■□□□ 1.7
LIME1-207ENST00000489212 MYH1P12882 1939 aa25.67■■□□□ 1.7
LIME1-207ENST00000489212 MAGEB6P1A0A0J9YX57 407 aa25.66■■□□□ 1.7
LIME1-207ENST00000489212 CXCL11O14625 94 aa25.66■■□□□ 1.7
LIME1-207ENST00000489212 USP5P45974 858 aa25.66■■□□□ 1.7
LIME1-207ENST00000489212 SLC4A8Q2Y0W8 1093 aa25.66■■□□□ 1.7
LIME1-207ENST00000489212 TSHZ3Q63HK5 1081 aa25.66■■□□□ 1.7
LIME1-207ENST00000489212 METTL16Q86W50 562 aaKnown RBP25.66■■□□□ 1.7
LIME1-207ENST00000489212 CHGBP05060 677 aa25.65■■□□□ 1.7
LIME1-207ENST00000489212 ZFYVE28Q9HCC9 887 aa25.65■■□□□ 1.7
LIME1-207ENST00000489212 ZCCHC17Q9NP64 241 aaKnown RBP25.65■■□□□ 1.7
LIME1-207ENST00000489212 ATAD5Q96QE3 1844 aa25.65■■□□□ 1.7
LIME1-207ENST00000489212 PTPRFP10586 1907 aa25.65■■□□□ 1.7
LIME1-207ENST00000489212 ADD2P35612 726 aa25.64■■□□□ 1.7
LIME1-207ENST00000489212 CAP2P40123 477 aa25.64■■□□□ 1.7
LIME1-207ENST00000489212 MYH7P12883 1935 aa25.63■■□□□ 1.69
LIME1-207ENST00000489212 CAP1Q01518 475 aa25.63■■□□□ 1.69
LIME1-207ENST00000489212 ANKRD23Q86SG2 305 aa25.63■■□□□ 1.69
LIME1-207ENST00000489212 FOXP4Q8IVH2 680 aaPredicted RBP25.63■■□□□ 1.69
LIME1-207ENST00000489212 OTUD7AQ8TE49 926 aaPredicted RBP25.63■■□□□ 1.69
LIME1-207ENST00000489212 A0A0G2JLL6 359 aaPredicted RBP25.62■■□□□ 1.69
LIME1-207ENST00000489212 JAG1P78504 1218 aa25.62■■□□□ 1.69
LIME1-207ENST00000489212 GPAT2Q6NUI2 795 aa25.62■■□□□ 1.69
LIME1-207ENST00000489212 PRRT2Q7Z6L0 340 aaPredicted RBP25.62■■□□□ 1.69
LIME1-207ENST00000489212 LCORLQ8N3X6 602 aa25.62■■□□□ 1.69
LIME1-207ENST00000489212 DDX60LQ5H9U9 1706 aaKnown RBP25.62■■□□□ 1.69
LIME1-207ENST00000489212 TRIM75PA6NK02 468 aa25.61■■□□□ 1.69
LIME1-207ENST00000489212 CCDC85CA6NKD9 419 aa25.61■■□□□ 1.69
LIME1-207ENST00000489212 PDHXO00330 501 aa25.61■■□□□ 1.69
LIME1-207ENST00000489212 HLA-DOAP06340 250 aa25.61■■□□□ 1.69
LIME1-207ENST00000489212 SP3Q02447 781 aa25.61■■□□□ 1.69
LIME1-207ENST00000489212 SHROOM1Q2M3G4 852 aaPredicted RBP25.61■■□□□ 1.69
LIME1-207ENST00000489212 CRACR2BQ8N4Y2 399 aaPredicted RBP25.61■■□□□ 1.69
LIME1-207ENST00000489212 CD99L2Q8TCZ2 262 aa25.61■■□□□ 1.69
LIME1-207ENST00000489212 NAV1Q8NEY1 1877 aa25.6■■□□□ 1.69
LIME1-207ENST00000489212 TLR2O60603 784 aa25.6■■□□□ 1.69
LIME1-207ENST00000489212 HDAC1Q13547 482 aaPredicted RBP25.6■■□□□ 1.69
LIME1-207ENST00000489212 GPATCH3Q96I76 525 aa25.6■■□□□ 1.69
LIME1-207ENST00000489212 CRNKL1Q9BZJ0 848 aaKnown RBP25.6■■□□□ 1.69
LIME1-207ENST00000489212 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.6■■□□□ 1.691e-9■■■■■ 29
LIME1-207ENST00000489212 ARMT1Q9H993 441 aa25.6■■□□□ 1.69
LIME1-207ENST00000489212 HTTP42858 3142 aa25.6■■□□□ 1.69
LIME1-207ENST00000489212 PKN2Q16513 984 aaKnown RBP25.59■■□□□ 1.69
LIME1-207ENST00000489212 EXOC6Q8TAG9 804 aa25.59■■□□□ 1.69
LIME1-207ENST00000489212 SDR42E1Q8WUS8 393 aa25.59■■□□□ 1.69
LIME1-207ENST00000489212 ERO1AQ96HE7 468 aa25.59■■□□□ 1.69
LIME1-207ENST00000489212 MBD4O95243 580 aa25.58■■□□□ 1.69
LIME1-207ENST00000489212 UBE3CQ15386 1083 aa25.58■■□□□ 1.69
LIME1-207ENST00000489212 OTOP1Q7RTM1 612 aa25.58■■□□□ 1.69
LIME1-207ENST00000489212 TRIM34Q9BYJ4 488 aa25.58■■□□□ 1.69
LIME1-207ENST00000489212 TRIM17Q9Y577 477 aa25.58■■□□□ 1.69
LIME1-207ENST00000489212 PRKAB2O43741 272 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 GDF11O95390 407 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 PLCD1P51178 756 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 EVX2Q03828 476 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 SPP2Q13103 211 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 GADL1Q6ZQY3 521 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 FASTKD5Q7L8L6 764 aaKnown RBP25.57■■□□□ 1.68
LIME1-207ENST00000489212 EHD4Q9H223 541 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 DCP1AQ9NPI6 582 aaPredicted RBP25.57■■□□□ 1.68
LIME1-207ENST00000489212 SUPT16HQ9Y5B9 1047 aaKnown RBP25.57■■□□□ 1.68
LIME1-207ENST00000489212 ADGRA2Q96PE1 1338 aa25.57■■□□□ 1.68
LIME1-207ENST00000489212 USP17L5A8MUK1 530 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 AAMPQ13685 434 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 ANKRD45Q5TZF3 282 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 C17orf99Q6UX52 265 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 TTC6Q86TZ1 520 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 KBTBD3Q8NAB2 608 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 ZNF280CQ8ND82 737 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 PI4K2BQ8TCG2 481 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 SERPINB13Q9UIV8 391 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 HPS5Q9UPZ3 1129 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 TTC41PQ6P2S7 1318 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 SALL3Q9BXA9 1300 aa25.56■■□□□ 1.68
LIME1-207ENST00000489212 CYP2C8P10632 490 aa25.55■■□□□ 1.68
LIME1-207ENST00000489212 TATDN1Q6P1N9 297 aa25.55■■□□□ 1.68
LIME1-207ENST00000489212 FBXO46Q6PJ61 603 aaPredicted RBP25.55■■□□□ 1.68
LIME1-207ENST00000489212 GCC1Q96CN9 775 aa25.55■■□□□ 1.68
LIME1-207ENST00000489212 PUS7LQ9H0K6 701 aaKnown RBP25.55■■□□□ 1.68
LIME1-207ENST00000489212 MCM9Q9NXL9 1143 aa25.55■■□□□ 1.68
LIME1-207ENST00000489212 CPA4Q9UI42 421 aa25.55■■□□□ 1.68
LIME1-207ENST00000489212 ZSWIM8A7E2V4 1837 aa25.54■■□□□ 1.68
LIME1-207ENST00000489212 POLR3DP05423 398 aaPredicted RBP25.54■■□□□ 1.68
LIME1-207ENST00000489212 ASNSP08243 561 aa25.54■■□□□ 1.68
LIME1-207ENST00000489212 ZSCAN25Q6NSZ9 544 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms