RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 WDR19Q8NEZ3 1342 aa18.77■□□□□ 0.59
SYNE1-227ENST00000489156 NAV1Q8NEY1 1877 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 HAND2P61296 217 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 TRDNQ13061 729 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 COL9A3Q14050 684 aaPredicted RBP18.76■□□□□ 0.59
SYNE1-227ENST00000489156 RAB3GAP1Q15042 981 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 ANP32EQ9BTT0 268 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 DCP1AQ9NPI6 582 aaPredicted RBP18.76■□□□□ 0.59
SYNE1-227ENST00000489156 TPCN1Q9ULQ1 816 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 LAMA4Q16363 1823 aa18.76■□□□□ 0.59
SYNE1-227ENST00000489156 Q6ZUG5 572 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 ZFPM1Q8IX07 1006 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 CLEC11AQ9Y240 323 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 FLT1P17948 1338 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 MCM5P33992 734 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 TDO2P48775 406 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 NFKBIBQ15653 356 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 ME3Q16798 604 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 RALYLQ86SE5 291 aaKnown RBP18.75■□□□□ 0.59
SYNE1-227ENST00000489156 TCEANC2Q96MN5 208 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 ATP8A2Q9NTI2 1148 aa18.75■□□□□ 0.59
SYNE1-227ENST00000489156 MKRN1Q9UHC7 482 aaKnown RBP18.75■□□□□ 0.59
SYNE1-227ENST00000489156 FGD1P98174 961 aa18.74■□□□□ 0.59
SYNE1-227ENST00000489156 SLC4A8Q2Y0W8 1093 aa18.74■□□□□ 0.59
SYNE1-227ENST00000489156 FKBP1CQ5VVH2 108 aa18.74■□□□□ 0.59
SYNE1-227ENST00000489156 ZC3H15Q8WU90 426 aaKnown RBP18.74■□□□□ 0.59
SYNE1-227ENST00000489156 DCPSQ96C86 337 aaKnown RBP18.74■□□□□ 0.59
SYNE1-227ENST00000489156 SAP30BPQ9UHR5 308 aaKnown RBP18.74■□□□□ 0.59
SYNE1-227ENST00000489156 CNTNAP1P78357 1384 aa18.74■□□□□ 0.59
SYNE1-227ENST00000489156 MB21D2Q8IYB1 491 aaPredicted RBP18.73■□□□□ 0.59
SYNE1-227ENST00000489156 NBPF3Q9H094 633 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 OSBPL5Q9H0X9 879 aaPredicted RBP18.73■□□□□ 0.59
SYNE1-227ENST00000489156 CNNM2Q9H8M5 875 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 MCM9Q9NXL9 1143 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 PGAP2Q9UHJ9 254 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 RASA3Q14644 834 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 APOBEC3FQ8IUX4 373 aaKnown RBP18.73■□□□□ 0.59
SYNE1-227ENST00000489156 LARP6Q9BRS8 491 aaKnown RBP18.73■□□□□ 0.59
SYNE1-227ENST00000489156 TMEM39BQ9GZU3 492 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 ANAPC4Q9UJX5 808 aa18.73■□□□□ 0.59
SYNE1-227ENST00000489156 PITPNM2Q9BZ72 1349 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 ENTPD3O75355 529 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 NPM3O75607 178 aaKnown RBP18.72■□□□□ 0.59
SYNE1-227ENST00000489156 LARGE1O95461 756 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 TNNI2P48788 182 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 TNFAIP1Q13829 316 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 FAM83AQ86UY5 434 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 FAM151AQ8WW52 585 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 CHMP4CQ96CF2 233 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 DEFB129Q9H1M3 183 aa18.72■□□□□ 0.59
SYNE1-227ENST00000489156 DDX60LQ5H9U9 1706 aaKnown RBP18.72■□□□□ 0.59
SYNE1-227ENST00000489156 USP17L12C9JPN9 530 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 USP17L21D6R901 530 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 EVCP57679 992 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 AKNAD1Q5T1N1 836 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 SH3BP5LQ7L8J4 393 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 TBC1D10CQ8IV04 446 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 ZSCAN29Q8IWY8 852 aaPredicted RBP18.71■□□□□ 0.59
SYNE1-227ENST00000489156 STAG1Q8WVM7 1258 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 BRF1Q92994 677 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 RNF41Q9H4P4 317 aaPredicted RBP18.71■□□□□ 0.59
SYNE1-227ENST00000489156 CYP2D7A0A087X1C5 515 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 DDTLA6NHG4 134 aaPredicted RBP18.71■□□□□ 0.59
SYNE1-227ENST00000489156 PCP11498 1178 aaKnown RBP18.71■□□□□ 0.59
SYNE1-227ENST00000489156 PDIA4P13667 645 aaKnown RBP18.71■□□□□ 0.59
SYNE1-227ENST00000489156 EVX2Q03828 476 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 PRAMEF18Q5VWM3 479 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 MAP1SQ66K74 1059 aaPredicted RBP18.71■□□□□ 0.59
SYNE1-227ENST00000489156 CTR9Q6PD62 1173 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 DLK2Q6UY11 383 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 KRT26Q7Z3Y9 468 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 LDHDQ86WU2 507 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 SULF1Q8IWU6 871 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 CDAN1Q8IWY9 1227 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 KRT23Q9C075 422 aa18.71■□□□□ 0.59
SYNE1-227ENST00000489156 SMIM22K7EJ46 135 aa18.7■□□□□ 0.58
SYNE1-227ENST00000489156 POLR3DP05423 398 aaPredicted RBP18.7■□□□□ 0.58
SYNE1-227ENST00000489156 CYP2D6P10635 497 aa18.7■□□□□ 0.58
SYNE1-227ENST00000489156 CLEC17AQ6ZS10 378 aa18.7■□□□□ 0.58
SYNE1-227ENST00000489156 MFSD6Q6ZSS7 791 aa18.7■□□□□ 0.58
SYNE1-227ENST00000489156 ZNF784Q8NCA9 323 aaPredicted RBP18.7■□□□□ 0.58
SYNE1-227ENST00000489156 ZNF274Q96GC6 653 aaPredicted RBP18.7■□□□□ 0.58
SYNE1-227ENST00000489156 MINDY4BA8MYZ0 360 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 ADM5C9JUS6 153 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 KIF3CO14782 793 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 PRC1O43663 620 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 PLCD1P51178 756 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 PPARAQ07869 468 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 USP48Q86UV5 1035 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 CCDC83Q8IWF9 413 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 TNPO1Q92973 898 aaKnown RBP18.69■□□□□ 0.58
SYNE1-227ENST00000489156 SMC3Q9UQE7 1217 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 LAMB1P07942 1786 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 NBR1Q14596 966 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 TMEM87BQ96K49 555 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 MTA3Q9BTC8 594 aa18.69■□□□□ 0.58
SYNE1-227ENST00000489156 GLIS2Q9BZE0 524 aaPredicted RBP18.69■□□□□ 0.58
SYNE1-227ENST00000489156 SIPA1L1O43166 1804 aa18.68■□□□□ 0.58
SYNE1-227ENST00000489156 SBK1Q52WX2 424 aa18.68■□□□□ 0.58
SYNE1-227ENST00000489156 GTF3C6Q969F1 213 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms