RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PUS7LQ9H0K6 701 aaKnown RBP12.36□□□□□ -0.43
SKA1-204ENST00000488454 PCDH10Q9P2E7 1040 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 PGAP2Q9UHJ9 254 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 PSME4Q14997 1843 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 TCP10L2B9ZVM9 353 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 TOMM70O94826 608 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 CHGBP05060 677 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 GNAT2P19087 354 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 NMIQ13287 307 aaPredicted RBP12.35□□□□□ -0.43
SKA1-204ENST00000488454 FKBP1CQ5VVH2 108 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 KRT26Q7Z3Y9 468 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 FAM227BQ96M60 508 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 ARMT1Q9H993 441 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 LHX6Q9UPM6 363 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 ASTN2O75129 1339 aaPredicted RBP12.35□□□□□ -0.43
SKA1-204ENST00000488454 PITPNM2Q9BZ72 1349 aa12.35□□□□□ -0.43
SKA1-204ENST00000488454 SCN4AP35499 1836 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 GPAA1O43292 621 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 APPP05067 770 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 CHMLP26374 656 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 CACNB3P54284 484 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 RHBDL3P58872 404 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 PICALMQ13492 652 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 MAP1SQ66K74 1059 aaPredicted RBP12.34□□□□□ -0.43
SKA1-204ENST00000488454 USP48Q86UV5 1035 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 ZSCAN29Q8IWY8 852 aaPredicted RBP12.34□□□□□ -0.43
SKA1-204ENST00000488454 LCORLQ8N3X6 602 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 SMC1BQ8NDV3 1235 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 TGFBRAP1Q8WUH2 860 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 STRBPQ96SI9 672 aaKnown RBP12.34□□□□□ -0.43
SKA1-204ENST00000488454 SEC62Q99442 399 aaKnown RBP12.34□□□□□ -0.43
SKA1-204ENST00000488454 RIOK1Q9BRS2 568 aaKnown RBP12.34□□□□□ -0.43
SKA1-204ENST00000488454 IDI2Q9BXS1 227 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 DEFB129Q9H1M3 183 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 SLC4A4Q9Y6R1 1079 aa12.34□□□□□ -0.43
SKA1-204ENST00000488454 M0R2C6 588 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 ENTPD3O75355 529 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 CDC45O75419 566 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 TCP10Q12799 353 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 RASA3Q14644 834 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 FAM83AQ86UY5 434 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 FAM151AQ8WW52 585 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 NACAP1Q9BZK3 213 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 ATP8A2Q9NTI2 1148 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 WDR70Q9NW82 654 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 PPP2R3BQ9Y5P8 575 aa12.33□□□□□ -0.44
SKA1-204ENST00000488454 A0A0D9SFI3 127 aa12.32□□□□□ -0.44
SKA1-204ENST00000488454 PATL2C9JE40 543 aaKnown RBP12.32□□□□□ -0.44
SKA1-204ENST00000488454 WDHD1O75717 1129 aaPredicted RBP12.32□□□□□ -0.44
SKA1-204ENST00000488454 NFIAQ12857 509 aa12.32□□□□□ -0.44
SKA1-204ENST00000488454 SUPT20HL1Q3ZLR7 823 aa12.32□□□□□ -0.44
SKA1-204ENST00000488454 MAPKAPK5Q8IW41 473 aa12.32□□□□□ -0.44
SKA1-204ENST00000488454 AMOTL1Q8IY63 956 aa12.32□□□□□ -0.44
SKA1-204ENST00000488454 RBM46Q8TBY0 533 aaKnown RBP12.32□□□□□ -0.44
SKA1-204ENST00000488454 GLIS2Q9BZE0 524 aaPredicted RBP12.32□□□□□ -0.44
SKA1-204ENST00000488454 SCAF8Q9UPN6 1271 aaKnown RBP12.32□□□□□ -0.44
SKA1-204ENST00000488454 ADM5C9JUS6 153 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 PRKAB2O43741 272 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 POLR3DP05423 398 aaPredicted RBP12.31□□□□□ -0.44
SKA1-204ENST00000488454 NF2P35240 595 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 MAP3K9P80192 1104 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 FSTL1Q12841 308 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 CCDC129Q6ZRS4 1044 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 KIAA1211Q6ZU35 1233 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 SDR42E1Q8WUS8 393 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 HOOK2Q96ED9 719 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 DHX36Q9H2U1 1008 aaKnown RBP12.31□□□□□ -0.44
SKA1-204ENST00000488454 FAM198AQ9UFP1 575 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 ZNF646O15015 1829 aaPredicted RBP12.31□□□□□ -0.44
SKA1-204ENST00000488454 CCDC171Q6TFL3 1326 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 RAD50Q92878 1312 aa12.31□□□□□ -0.44
SKA1-204ENST00000488454 RPAP1Q9BWH6 1393 aaPredicted RBP12.3□□□□□ -0.44
SKA1-204ENST00000488454 EIF5BO60841 1220 aaKnown RBP12.3□□□□□ -0.44
SKA1-204ENST00000488454 HLA-DOAP06340 250 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 TDO2P48775 406 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 GIMAP6Q6P9H5 292 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 TTC6Q86TZ1 520 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 TRIM34Q9BYJ4 488 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 TMEM39BQ9GZU3 492 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 OSBPL5Q9H0X9 879 aaPredicted RBP12.3□□□□□ -0.44
SKA1-204ENST00000488454 DDX4Q9NQI0 724 aaKnown RBP12.3□□□□□ -0.44
SKA1-204ENST00000488454 MCM9Q9NXL9 1143 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 SAP30BPQ9UHR5 308 aaKnown RBP12.3□□□□□ -0.44
SKA1-204ENST00000488454 MYH2Q9UKX2 1941 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 FLT1P17948 1338 aa12.3□□□□□ -0.44
SKA1-204ENST00000488454 E2F4Q16254 413 aa12.29□□□□□ -0.44
SKA1-204ENST00000488454 PRAMEF18Q5VWM3 479 aa12.29□□□□□ -0.44
SKA1-204ENST00000488454 ZFPM1Q8IX07 1006 aa12.29□□□□□ -0.44
SKA1-204ENST00000488454 IFNL3Q8IZI9 196 aa12.29□□□□□ -0.44
SKA1-204ENST00000488454 ESYT1Q9BSJ8 1104 aa12.29□□□□□ -0.44
SKA1-204ENST00000488454 NAPBQ9H115 298 aa12.29□□□□□ -0.44
SKA1-204ENST00000488454 DCP1AQ9NPI6 582 aaPredicted RBP12.29□□□□□ -0.44
SKA1-204ENST00000488454 MAST2Q6P0Q8 1798 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 DOCK2Q92608 1830 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 GSG1L2A8MUP6 293 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 TRAF5O00463 557 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 SGSM2O43147 1006 aa12.28□□□□□ -0.44
SKA1-204ENST00000488454 PPP1R12BO60237 982 aaPredicted RBP12.28□□□□□ -0.44
SKA1-204ENST00000488454 HSPD1P10809 573 aaKnown RBP12.28□□□□□ -0.44
SKA1-204ENST00000488454 TTLL12Q14166 644 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms