RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 CAPN15O75808 1086 aa18.11■□□□□ 0.49
TRIM54-204ENST00000488321 ADD2P35612 726 aa18.11■□□□□ 0.49
TRIM54-204ENST00000488321 DGKZQ13574 1117 aa18.11■□□□□ 0.49
TRIM54-204ENST00000488321 SLFNL1Q499Z3 407 aa18.11■□□□□ 0.49
TRIM54-204ENST00000488321 ZSCAN25Q6NSZ9 544 aa18.11■□□□□ 0.49
TRIM54-204ENST00000488321 OTUD7AQ8TE49 926 aaPredicted RBP18.11■□□□□ 0.49
TRIM54-204ENST00000488321 CRNKL1Q9BZJ0 848 aaKnown RBP18.11■□□□□ 0.49
TRIM54-204ENST00000488321 RWDD1Q9H446 243 aaPredicted RBP18.11■□□□□ 0.49
TRIM54-204ENST00000488321 OTOFQ9HC10 1997 aa18.11■□□□□ 0.49
TRIM54-204ENST00000488321 ERC2O15083 957 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 PTPRAP18433 802 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 IRX6P78412 446 aaPredicted RBP18.1■□□□□ 0.49
TRIM54-204ENST00000488321 CRHR2Q13324 411 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 FOXP4Q8IVH2 680 aaPredicted RBP18.1■□□□□ 0.49
TRIM54-204ENST00000488321 FAM43AQ8N2R8 423 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 LCORLQ8N3X6 602 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 CFHR5Q9BXR6 569 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 ARMT1Q9H993 441 aa18.1■□□□□ 0.49
TRIM54-204ENST00000488321 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.1■□□□□ 0.49
TRIM54-204ENST00000488321 TTC41PQ6P2S7 1318 aa18.09■□□□□ 0.49
TRIM54-204ENST00000488321 MBD4O95243 580 aa18.09■□□□□ 0.49
TRIM54-204ENST00000488321 CHGBP05060 677 aa18.09■□□□□ 0.49
TRIM54-204ENST00000488321 MX1P20591 662 aa18.09■□□□□ 0.49
TRIM54-204ENST00000488321 TAF1CQ15572 869 aaPredicted RBP18.09■□□□□ 0.49
TRIM54-204ENST00000488321 CCDC84Q86UT8 332 aaPredicted RBP18.09■□□□□ 0.49
TRIM54-204ENST00000488321 KCNH4Q9UQ05 1017 aa18.09■□□□□ 0.49
TRIM54-204ENST00000488321 BTBD19C9JJ37 291 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 FKTNO75072 461 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 CAP2P40123 477 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 UBE3CQ15386 1083 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 B4GALNT3Q6L9W6 998 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 TTC6Q86TZ1 520 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 SDR42E1Q8WUS8 393 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 MCOLN1Q9GZU1 580 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 ZFYVE28Q9HCC9 887 aa18.08■□□□□ 0.48
TRIM54-204ENST00000488321 TRIM75PA6NK02 468 aa18.07■□□□□ 0.48
TRIM54-204ENST00000488321 CXCL11O14625 94 aa18.07■□□□□ 0.48
TRIM54-204ENST00000488321 GLRX3O76003 335 aaKnown RBP18.07■□□□□ 0.48
TRIM54-204ENST00000488321 POLR3DP05423 398 aaPredicted RBP18.07■□□□□ 0.48
TRIM54-204ENST00000488321 RRP1BQ14684 758 aaKnown RBP18.07■□□□□ 0.48
TRIM54-204ENST00000488321 NOM1Q5C9Z4 860 aaKnown RBP18.07■□□□□ 0.48
TRIM54-204ENST00000488321 KBTBD3Q8NAB2 608 aa18.07■□□□□ 0.48
TRIM54-204ENST00000488321 DNAJC18Q9H819 358 aa18.07■□□□□ 0.48
TRIM54-204ENST00000488321 MCM9Q9NXL9 1143 aa18.07■□□□□ 0.48
TRIM54-204ENST00000488321 CTU1Q7Z7A3 348 aaKnown RBP18.06■□□□□ 0.48
TRIM54-204ENST00000488321 PI4K2BQ8TCG2 481 aa18.06■□□□□ 0.48
TRIM54-204ENST00000488321 SERPINB13Q9UIV8 391 aa18.06■□□□□ 0.48
TRIM54-204ENST00000488321 AFG3L2Q9Y4W6 797 aa18.06■□□□□ 0.48
TRIM54-204ENST00000488321 DOCK2Q92608 1830 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 PDHXO00330 501 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 PRKAB2O43741 272 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 GDF11O95390 407 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 IGHDP01880 384 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 GADL1Q6ZQY3 521 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 ANKRD23Q86SG2 305 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 METTL16Q86W50 562 aaKnown RBP18.05■□□□□ 0.48
TRIM54-204ENST00000488321 ABHD8Q96I13 439 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 LNPKQ9C0E8 428 aa18.05■□□□□ 0.48
TRIM54-204ENST00000488321 PUS7LQ9H0K6 701 aaKnown RBP18.05■□□□□ 0.48
TRIM54-204ENST00000488321 ZCCHC17Q9NP64 241 aaKnown RBP18.05■□□□□ 0.48
TRIM54-204ENST00000488321 A0A0G2JLL6 359 aaPredicted RBP18.04■□□□□ 0.48
TRIM54-204ENST00000488321 USP17L5A8MUK1 530 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 RNF113AO15541 343 aaKnown RBP18.04■□□□□ 0.48
TRIM54-204ENST00000488321 ASNSP08243 561 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 PLCD1P51178 756 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 SPP2Q13103 211 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 LRRFIP1Q32MZ4 808 aaKnown RBP18.04■□□□□ 0.48
TRIM54-204ENST00000488321 FASTKD5Q7L8L6 764 aaKnown RBP18.04■□□□□ 0.48
TRIM54-204ENST00000488321 PRRT2Q7Z6L0 340 aaPredicted RBP18.04■□□□□ 0.48
TRIM54-204ENST00000488321 DDRGK1Q96HY6 314 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 FSD1Q9BTV5 496 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 EHD4Q9H223 541 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 AS3MTQ9HBK9 375 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 DCP1AQ9NPI6 582 aaPredicted RBP18.04■□□□□ 0.48
TRIM54-204ENST00000488321 SLC4A4Q9Y6R1 1079 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 AK9Q5TCS8 1911 aa18.04■□□□□ 0.48
TRIM54-204ENST00000488321 ZFYP08048 801 aaPredicted RBP18.03■□□□□ 0.48
TRIM54-204ENST00000488321 SP3Q02447 781 aa18.03■□□□□ 0.48
TRIM54-204ENST00000488321 MOGSQ13724 837 aa18.03■□□□□ 0.48
TRIM54-204ENST00000488321 SMC5Q8IY18 1101 aa18.03■□□□□ 0.48
TRIM54-204ENST00000488321 ZNF280CQ8ND82 737 aa18.03■□□□□ 0.48
TRIM54-204ENST00000488321 ATP8A2Q9NTI2 1148 aa18.03■□□□□ 0.48
TRIM54-204ENST00000488321 SALL3Q9BXA9 1300 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 JAG1P78504 1218 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 SHROOM1Q2M3G4 852 aaPredicted RBP18.02■□□□□ 0.48
TRIM54-204ENST00000488321 AMOTL1Q8IY63 956 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 APPBP2Q92624 585 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 ERO1AQ96HE7 468 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 TBC1D2Q9BYX2 928 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 ZBTB21Q9ULJ3 1066 aa18.02■□□□□ 0.48
TRIM54-204ENST00000488321 MYO5AQ9Y4I1 1855 aaKnown RBP18.01■□□□□ 0.47
TRIM54-204ENST00000488321 TLR2O60603 784 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 GH2P01242 217 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 CYP2D6P10635 497 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 PDE1AP54750 535 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 CERKLQ49MI3 558 aaPredicted RBP18.01■□□□□ 0.47
TRIM54-204ENST00000488321 GPAT2Q6NUI2 795 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 CHD1LQ86WJ1 897 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 CD99L2Q8TCZ2 262 aa18.01■□□□□ 0.47
TRIM54-204ENST00000488321 OSBP2Q969R2 916 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms