RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 HCLS1P14317 486 aaPredicted RBP8.69□□□□□ -1.02
USP48-209ENST00000487880 MAP4P27816 1152 aaKnown RBP8.69□□□□□ -1.02
USP48-209ENST00000487880 ZC3H6P61129 1189 aaKnown RBP8.69□□□□□ -1.02
USP48-209ENST00000487880 ISL2Q96A47 359 aa8.69□□□□□ -1.02
USP48-209ENST00000487880 SPATA32Q96LK8 384 aa8.69□□□□□ -1.02
USP48-209ENST00000487880 PIDD1Q9HB75 910 aa8.69□□□□□ -1.02
USP48-209ENST00000487880 INPP5FQ9Y2H2 1132 aa8.69□□□□□ -1.02
USP48-209ENST00000487880 RAB6AP20340 208 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 GRK4P32298 578 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 SEZ6Q53EL9 994 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 PRR23CQ6ZRP0 262 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 SMYD4Q8IYR2 804 aaPredicted RBP8.68□□□□□ -1.02
USP48-209ENST00000487880 REXO1Q8N1G1 1221 aaKnown RBP8.68□□□□□ -1.02
USP48-209ENST00000487880 NKD1Q969G9 470 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 C8orf37Q96NL8 207 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 YIPF2Q9BWQ6 316 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 BRMS1Q9HCU9 246 aa8.68□□□□□ -1.02
USP48-209ENST00000487880 ATE1O95260 518 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 NFICP08651 508 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 DOC2BQ14184 412 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 NKAPLQ5M9Q1 402 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 SEZ6L2Q6UXD5 910 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 BEND4Q6ZU67 534 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 UBE3DQ7Z6J8 389 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 CLEC10AQ8IUN9 316 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 FAM83CQ9BQN1 747 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 EHMT1Q9H9B1 1298 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 ADAM30Q9UKF2 790 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 RAXQ9Y2V3 346 aa8.67□□□□□ -1.02
USP48-209ENST00000487880 GRIN3BO60391 1043 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 H2AFB1P0C5Y9 115 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 H2AFB2P0C5Z0 115 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 CAP2P40123 477 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 SOX9P48436 509 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 COL9A2Q14055 689 aaPredicted RBP8.66□□□□□ -1.02
USP48-209ENST00000487880 RSPO4Q2I0M5 234 aaPredicted RBP8.66□□□□□ -1.02
USP48-209ENST00000487880 SLC43A3Q8NBI5 491 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 ZNF507Q8TCN5 953 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 FBRSQ9HAH7 460 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 CAPN10Q9HC96 672 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 PICK1Q9NRD5 415 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 CORINQ9Y5Q5 1042 aa8.66□□□□□ -1.02
USP48-209ENST00000487880 FAM95CA0A1B0GW59 222 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 DYNC1LI2O43237 492 aaPredicted RBP8.65□□□□□ -1.02
USP48-209ENST00000487880 RNGTTO60942 597 aaKnown RBP8.65□□□□□ -1.02
USP48-209ENST00000487880 HTR3BO95264 441 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 ETF1P62495 437 aaKnown RBP8.65□□□□□ -1.02
USP48-209ENST00000487880 PDE4BQ07343 736 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 MAP7Q14244 749 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 TMEM201Q5SNT2 666 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 KCT2Q8NC54 265 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 KCNF1Q9H3M0 494 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 C7orf69Q9H7B7 122 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 GINM1Q9NU53 330 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 PCOLCE2Q9UKZ9 415 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 DAGLAQ9Y4D2 1042 aa8.65□□□□□ -1.02
USP48-209ENST00000487880 ZNF165P49910 485 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 CLCQ05315 142 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 HID1Q8IV36 788 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 SEC16BQ96JE7 1060 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 C1GALT1Q9NS00 363 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 STOML1Q9UBI4 398 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 PCDHB14Q9Y5E9 798 aa8.64□□□□□ -1.03
USP48-209ENST00000487880 HMX2A2RU54 273 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 PGRP06401 933 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 RXRBP28702 533 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 GNL2Q13823 731 aaKnown RBP8.63□□□□□ -1.03
USP48-209ENST00000487880 SLBPQ14493 270 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP48-209ENST00000487880 NKG7Q16617 165 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 NAALADL2Q58DX5 795 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP48-209ENST00000487880 MRPL41Q8IXM3 137 aaKnown RBP8.63□□□□□ -1.03
USP48-209ENST00000487880 ACSF2Q96CM8 615 aaPredicted RBP8.63□□□□□ -1.03
USP48-209ENST00000487880 PSMG3-AS1Q96PY0 264 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 GMLQ99445 158 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 REV1Q9UBZ9 1251 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 TJP2Q9UDY2 1190 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 ZNRF3Q9ULT6 936 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 EFR3BQ9Y2G0 817 aa8.63□□□□□ -1.03
USP48-209ENST00000487880 ATF4P18848 351 aaPredicted RBP8.62□□□□□ -1.03
USP48-209ENST00000487880 PLCG1P19174 1290 aa8.62□□□□□ -1.03
USP48-209ENST00000487880 PAOXQ6QHF9 649 aa8.62□□□□□ -1.03
USP48-209ENST00000487880 MCATQ8IVS2 390 aaKnown RBP8.62□□□□□ -1.03
USP48-209ENST00000487880 GATA6Q92908 595 aa8.62□□□□□ -1.03
USP48-209ENST00000487880 PRKAG2Q9UGJ0 569 aa8.62□□□□□ -1.03
USP48-209ENST00000487880 DNAJA2O60884 412 aa8.61□□□□□ -1.03
USP48-209ENST00000487880 MCM4P33991 863 aa8.61□□□□□ -1.03
USP48-209ENST00000487880 GK5Q6ZS86 529 aa8.61□□□□□ -1.03
USP48-209ENST00000487880 CDC37L1Q7L3B6 337 aa8.61□□□□□ -1.03
USP48-209ENST00000487880 TMEM87BQ96K49 555 aa8.61□□□□□ -1.03
USP48-209ENST00000487880 SSU72Q9NP77 194 aaKnown RBP8.61□□□□□ -1.03
USP48-209ENST00000487880 MEIS3P2A8K0S8 358 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 DYRK3O43781 588 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 NASPP49321 788 aaPredicted RBP8.6□□□□□ -1.03
USP48-209ENST00000487880 NFKBIBQ15653 356 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 RNF43Q68DV7 783 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 SLC6A19Q695T7 634 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 ARMCX6Q7L4S7 300 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 PPT2Q9UMR5 302 aa8.6□□□□□ -1.03
USP48-209ENST00000487880 LRIG2O94898 1065 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms