RNA–Protein interactions for RNA: ENST00000485870.1

COL1A1-206, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 403 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-206ENST00000485870 ABHD8Q96I13 439 aa22.32■■□□□ 1.16
COL1A1-206ENST00000485870 GPATCH3Q96I76 525 aa22.32■■□□□ 1.16
COL1A1-206ENST00000485870 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.32■■□□□ 1.16
COL1A1-206ENST00000485870 PI4KBQ9UBF8 816 aa22.32■■□□□ 1.16
COL1A1-206ENST00000485870 BTBD19C9JJ37 291 aa22.31■■□□□ 1.16
COL1A1-206ENST00000485870 FKTNO75072 461 aa22.31■■□□□ 1.16
COL1A1-206ENST00000485870 PTPRAP18433 802 aa22.31■■□□□ 1.16
COL1A1-206ENST00000485870 TAF1CQ15572 869 aaPredicted RBP22.31■■□□□ 1.16
COL1A1-206ENST00000485870 RIOK1Q9BRS2 568 aaKnown RBP22.31■■□□□ 1.16
COL1A1-206ENST00000485870 HERC5Q9UII4 1024 aaKnown RBP22.31■■□□□ 1.16
COL1A1-206ENST00000485870 KCNH4Q9UQ05 1017 aa22.31■■□□□ 1.16
COL1A1-206ENST00000485870 ZHX2Q9Y6X8 837 aa22.31■■□□□ 1.16
COL1A1-206ENST00000485870 MYH1P12882 1939 aa22.31■■□□□ 1.16
COL1A1-206ENST00000485870 TCRBV5S4A2TA0A5A2 114 aa22.3■■□□□ 1.16
COL1A1-206ENST00000485870 SLFNL1Q499Z3 407 aa22.3■■□□□ 1.16
COL1A1-206ENST00000485870 CTU1Q7Z7A3 348 aaKnown RBP22.3■■□□□ 1.16
COL1A1-206ENST00000485870 CCDC84Q86UT8 332 aaPredicted RBP22.3■■□□□ 1.16
COL1A1-206ENST00000485870 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.3■■□□□ 1.16
COL1A1-206ENST00000485870 HLA-DOAP06340 250 aa22.29■■□□□ 1.16
COL1A1-206ENST00000485870 CRACR2BQ8N4Y2 399 aaPredicted RBP22.29■■□□□ 1.16
COL1A1-206ENST00000485870 TRIM34Q9BYJ4 488 aa22.29■■□□□ 1.16
COL1A1-206ENST00000485870 SUPT16HQ9Y5B9 1047 aaKnown RBP22.29■■□□□ 1.16
COL1A1-206ENST00000485870 MYH7P12883 1935 aa22.29■■□□□ 1.16
COL1A1-206ENST00000485870 ADD2P35612 726 aa22.28■■□□□ 1.16
COL1A1-206ENST00000485870 RRP1BQ14684 758 aaKnown RBP22.28■■□□□ 1.16
COL1A1-206ENST00000485870 EXOC6Q8TAG9 804 aa22.28■■□□□ 1.16
COL1A1-206ENST00000485870 CRNKL1Q9BZJ0 848 aaKnown RBP22.28■■□□□ 1.16
COL1A1-206ENST00000485870 DNAJC18Q9H819 358 aa22.28■■□□□ 1.16
COL1A1-206ENST00000485870 ZFYVE28Q9HCC9 887 aa22.28■■□□□ 1.16
COL1A1-206ENST00000485870 ATAD5Q96QE3 1844 aa22.28■■□□□ 1.16
COL1A1-206ENST00000485870 PHIPQ8WWQ0 1821 aa22.27■■□□□ 1.16
COL1A1-206ENST00000485870 CXCL11O14625 94 aa22.27■■□□□ 1.16
COL1A1-206ENST00000485870 CHGBP05060 677 aa22.27■■□□□ 1.16
COL1A1-206ENST00000485870 CAP2P40123 477 aa22.27■■□□□ 1.16
COL1A1-206ENST00000485870 HDAC1Q13547 482 aaPredicted RBP22.27■■□□□ 1.16
COL1A1-206ENST00000485870 FOXP4Q8IVH2 680 aaPredicted RBP22.27■■□□□ 1.16
COL1A1-206ENST00000485870 LCORLQ8N3X6 602 aa22.27■■□□□ 1.16
COL1A1-206ENST00000485870 OTUD7AQ8TE49 926 aaPredicted RBP22.27■■□□□ 1.16
COL1A1-206ENST00000485870 AFG3L2Q9Y4W6 797 aa22.27■■□□□ 1.16
COL1A1-206ENST00000485870 NAV1Q8NEY1 1877 aa22.26■■□□□ 1.15
COL1A1-206ENST00000485870 TRIM75PA6NK02 468 aa22.26■■□□□ 1.15
COL1A1-206ENST00000485870 AAMPQ13685 434 aa22.26■■□□□ 1.15
COL1A1-206ENST00000485870 MOGSQ13724 837 aa22.26■■□□□ 1.15
COL1A1-206ENST00000485870 ANKRD45Q5TZF3 282 aa22.26■■□□□ 1.15
COL1A1-206ENST00000485870 ARMT1Q9H993 441 aa22.26■■□□□ 1.15
COL1A1-206ENST00000485870 ZBTB47Q9UFB7 747 aaPredicted RBP22.26■■□□□ 1.15
COL1A1-206ENST00000485870 MBD4O95243 580 aa22.25■■□□□ 1.15
COL1A1-206ENST00000485870 ANKRD23Q86SG2 305 aa22.25■■□□□ 1.15
COL1A1-206ENST00000485870 METTL16Q86W50 562 aaKnown RBP22.25■■□□□ 1.15
COL1A1-206ENST00000485870 GCC1Q96CN9 775 aa22.25■■□□□ 1.15
COL1A1-206ENST00000485870 ZCCHC17Q9NP64 241 aaKnown RBP22.25■■□□□ 1.15
COL1A1-206ENST00000485870 PTPRFP10586 1907 aa22.24■■□□□ 1.15
COL1A1-206ENST00000485870 A0A0G2JLL6 359 aaPredicted RBP22.24■■□□□ 1.15
COL1A1-206ENST00000485870 PDHXO00330 501 aa22.24■■□□□ 1.15
COL1A1-206ENST00000485870 ZSCAN25Q6NSZ9 544 aa22.24■■□□□ 1.15
COL1A1-206ENST00000485870 GADL1Q6ZQY3 521 aa22.24■■□□□ 1.15
COL1A1-206ENST00000485870 PRRT2Q7Z6L0 340 aaPredicted RBP22.24■■□□□ 1.15
COL1A1-206ENST00000485870 SDR42E1Q8WUS8 393 aa22.24■■□□□ 1.15
COL1A1-206ENST00000485870 TTC41PQ6P2S7 1318 aa22.24■■□□□ 1.15
COL1A1-206ENST00000485870 DDX60LQ5H9U9 1706 aaKnown RBP22.23■■□□□ 1.15
COL1A1-206ENST00000485870 CCDC85CA6NKD9 419 aa22.23■■□□□ 1.15
COL1A1-206ENST00000485870 GDF11O95390 407 aa22.23■■□□□ 1.15
COL1A1-206ENST00000485870 SP3Q02447 781 aa22.23■■□□□ 1.15
COL1A1-206ENST00000485870 UBE3CQ15386 1083 aa22.23■■□□□ 1.15
COL1A1-206ENST00000485870 TTC6Q86TZ1 520 aa22.23■■□□□ 1.15
COL1A1-206ENST00000485870 CD99L2Q8TCZ2 262 aa22.23■■□□□ 1.15
COL1A1-206ENST00000485870 ERC2O15083 957 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 POLR3DP05423 398 aaPredicted RBP22.22■■□□□ 1.15
COL1A1-206ENST00000485870 MX1P20591 662 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 SHROOM1Q2M3G4 852 aaPredicted RBP22.22■■□□□ 1.15
COL1A1-206ENST00000485870 GPAT2Q6NUI2 795 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 FASTKD5Q7L8L6 764 aaKnown RBP22.22■■□□□ 1.15
COL1A1-206ENST00000485870 KBTBD3Q8NAB2 608 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 PI4K2BQ8TCG2 481 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 ERO1AQ96HE7 468 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 MCM9Q9NXL9 1143 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 SERPINB13Q9UIV8 391 aa22.22■■□□□ 1.15
COL1A1-206ENST00000485870 USP17L5A8MUK1 530 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 PRKAB2O43741 272 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 TLR2O60603 784 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 PLCD1P51178 756 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 JAG1P78504 1218 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 SPP2Q13103 211 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 EHD4Q9H223 541 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 TRIM17Q9Y577 477 aa22.21■■□□□ 1.15
COL1A1-206ENST00000485870 GLRX3O76003 335 aaKnown RBP22.2■■□□□ 1.14
COL1A1-206ENST00000485870 ASNSP08243 561 aa22.2■■□□□ 1.14
COL1A1-206ENST00000485870 PKN2Q16513 984 aaKnown RBP22.2■■□□□ 1.14
COL1A1-206ENST00000485870 ZNF280CQ8ND82 737 aa22.2■■□□□ 1.14
COL1A1-206ENST00000485870 PUS7LQ9H0K6 701 aaKnown RBP22.2■■□□□ 1.14
COL1A1-206ENST00000485870 RWDD1Q9H446 243 aaPredicted RBP22.2■■□□□ 1.14
COL1A1-206ENST00000485870 DCP1AQ9NPI6 582 aaPredicted RBP22.2■■□□□ 1.14
COL1A1-206ENST00000485870 EVX2Q03828 476 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 OTOP1Q7RTM1 612 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 TBC1D2Q9BYX2 928 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 AS3MTQ9HBK9 375 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 CPA4Q9UI42 421 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 ZBTB21Q9ULJ3 1066 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 SALL3Q9BXA9 1300 aa22.19■■□□□ 1.14
COL1A1-206ENST00000485870 BAZ2AQ9UIF9 1905 aaKnown RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms