RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 NUCB1Q02818 461 aa21.75■■□□□ 1.07
HDAC6-225ENST00000483506 IFNL1Q8IU54 200 aa21.75■■□□□ 1.07
HDAC6-225ENST00000483506 CRNKL1Q9BZJ0 848 aaKnown RBP21.75■■□□□ 1.07
HDAC6-225ENST00000483506 PHIPQ8WWQ0 1821 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 TRPA1O75762 1119 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 ALDH1A1P00352 501 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 PDE1AP54750 535 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 SLFNL1Q499Z3 407 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 FOXP4Q8IVH2 680 aaPredicted RBP21.74■■□□□ 1.07
HDAC6-225ENST00000483506 LCORLQ8N3X6 602 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.74■■□□□ 1.07
HDAC6-225ENST00000483506 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.74■■□□□ 1.07
HDAC6-225ENST00000483506 TSKSQ9UJT2 592 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 PALD1Q9ULE6 856 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 KCNH4Q9UQ05 1017 aa21.74■■□□□ 1.07
HDAC6-225ENST00000483506 IGF2BP3O00425 579 aaKnown RBP eCLIP21.73■■□□□ 1.07
HDAC6-225ENST00000483506 IRF6O14896 467 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 CHGBP05060 677 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 ZFYP08048 801 aaPredicted RBP21.73■■□□□ 1.07
HDAC6-225ENST00000483506 COL13A1Q5TAT6 717 aaPredicted RBP21.73■■□□□ 1.07
HDAC6-225ENST00000483506 CHD1LQ86WJ1 897 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 LNPKQ9C0E8 428 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 EHD4Q9H223 541 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 DNAJC18Q9H819 358 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 ATAD5Q96QE3 1844 aa21.73■■□□□ 1.07
HDAC6-225ENST00000483506 FAM196BA6NMK8 535 aa21.72■■□□□ 1.07
HDAC6-225ENST00000483506 MBD4O95243 580 aa21.72■■□□□ 1.07
HDAC6-225ENST00000483506 HLA-DOAP06340 250 aa21.72■■□□□ 1.07
HDAC6-225ENST00000483506 NOM1Q5C9Z4 860 aaKnown RBP21.72■■□□□ 1.07
HDAC6-225ENST00000483506 BRI3BPQ8WY22 251 aa21.72■■□□□ 1.07
HDAC6-225ENST00000483506 PTPN18Q99952 460 aa21.72■■□□□ 1.07
HDAC6-225ENST00000483506 ARMT1Q9H993 441 aa21.72■■□□□ 1.07
HDAC6-225ENST00000483506 SAP30BPQ9UHR5 308 aaKnown RBP21.72■■□□□ 1.07
HDAC6-225ENST00000483506 RNF113AO15541 343 aaKnown RBP21.71■■□□□ 1.07
HDAC6-225ENST00000483506 PTPRAP18433 802 aa21.71■■□□□ 1.07
HDAC6-225ENST00000483506 SNAPC2Q13487 334 aa21.71■■□□□ 1.07
HDAC6-225ENST00000483506 LRRFIP1Q32MZ4 808 aaKnown RBP21.71■■□□□ 1.07
HDAC6-225ENST00000483506 PUS7LQ9H0K6 701 aaKnown RBP21.71■■□□□ 1.07
HDAC6-225ENST00000483506 DCP1AQ9NPI6 582 aaPredicted RBP21.71■■□□□ 1.07
HDAC6-225ENST00000483506 PICK1Q9NRD5 415 aa21.71■■□□□ 1.07
HDAC6-225ENST00000483506 CCL15-CCL14A0A0B4J2E2 113 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 CETPP11597 493 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 CAP2P40123 477 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 RRP1BQ14684 758 aaKnown RBP21.7■■□□□ 1.06
HDAC6-225ENST00000483506 CCL15Q16663 113 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 OTUD7BQ6GQQ9 843 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 B4GALNT3Q6L9W6 998 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 TTC6Q86TZ1 520 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 APPBP2Q92624 585 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 ATP8A2Q9NTI2 1148 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 PTPRFP10586 1907 aa21.7■■□□□ 1.06
HDAC6-225ENST00000483506 CXCL11O14625 94 aa21.69■■□□□ 1.06
HDAC6-225ENST00000483506 TICAM2Q86XR7 235 aa21.69■■□□□ 1.06
HDAC6-225ENST00000483506 SDR42E1Q8WUS8 393 aa21.69■■□□□ 1.06
HDAC6-225ENST00000483506 OSBPL3Q9H4L5 887 aa21.69■■□□□ 1.06
HDAC6-225ENST00000483506 ZCCHC17Q9NP64 241 aaKnown RBP21.69■■□□□ 1.06
HDAC6-225ENST00000483506 SERPINB13Q9UIV8 391 aa21.69■■□□□ 1.06
HDAC6-225ENST00000483506 TAOK2Q9UL54 1235 aa21.69■■□□□ 1.06
HDAC6-225ENST00000483506 CASP8AP2Q9UKL3 1982 aa21.68■■□□□ 1.06
HDAC6-225ENST00000483506 CRACR2BQ8N4Y2 399 aaPredicted RBP21.68■■□□□ 1.06
HDAC6-225ENST00000483506 OSBP2Q969R2 916 aa21.68■■□□□ 1.06
HDAC6-225ENST00000483506 TBC1D2Q9BYX2 928 aa21.68■■□□□ 1.06
HDAC6-225ENST00000483506 GINM1Q9NU53 330 aa21.68■■□□□ 1.06
HDAC6-225ENST00000483506 AFG3L2Q9Y4W6 797 aa21.68■■□□□ 1.06
HDAC6-225ENST00000483506 ZHX2Q9Y6X8 837 aa21.68■■□□□ 1.06
HDAC6-225ENST00000483506 BAZ2AQ9UIF9 1905 aaKnown RBP21.67■■□□□ 1.06
HDAC6-225ENST00000483506 PRKAB2O43741 272 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 GABPAQ06546 454 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 MOGSQ13724 837 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 TATDN1Q6P1N9 297 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 PLEKHM2Q8IWE5 1019 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 EVI5LQ96CN4 794 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 STRBPQ96SI9 672 aaKnown RBP21.67■■□□□ 1.06
HDAC6-225ENST00000483506 FSD1Q9BTV5 496 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 MCM9Q9NXL9 1143 aa21.67■■□□□ 1.06
HDAC6-225ENST00000483506 TBC1D8O95759 1140 aa21.66■■□□□ 1.06
HDAC6-225ENST00000483506 PLCD1P51178 756 aa21.66■■□□□ 1.06
HDAC6-225ENST00000483506 TRIM34Q9BYJ4 488 aa21.66■■□□□ 1.06
HDAC6-225ENST00000483506 A0A0G2JLL6 359 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-225ENST00000483506 POLR3DP05423 398 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-225ENST00000483506 ASNSP08243 561 aa21.65■■□□□ 1.06
HDAC6-225ENST00000483506 SLC4A8Q2Y0W8 1093 aa21.65■■□□□ 1.06
HDAC6-225ENST00000483506 ZMYM1Q5SVZ6 1142 aa21.65■■□□□ 1.06
HDAC6-225ENST00000483506 PRRT2Q7Z6L0 340 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-225ENST00000483506 FAM43AQ8N2R8 423 aa21.65■■□□□ 1.06
HDAC6-225ENST00000483506 R3HDMLQ9H3Y0 253 aa21.65■■□□□ 1.06
HDAC6-225ENST00000483506 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.65■■□□□ 1.06
HDAC6-225ENST00000483506 BTBD19C9JJ37 291 aa21.64■■□□□ 1.05
HDAC6-225ENST00000483506 GPR25O00155 361 aa21.64■■□□□ 1.05
HDAC6-225ENST00000483506 GIMAP6Q6P9H5 292 aa21.64■■□□□ 1.05
HDAC6-225ENST00000483506 ANKRD23Q86SG2 305 aa21.64■■□□□ 1.05
HDAC6-225ENST00000483506 SLC4A4Q9Y6R1 1079 aa21.64■■□□□ 1.05
HDAC6-225ENST00000483506 USP17L5A8MUK1 530 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 M0R2C6 588 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 GPAA1O43292 621 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 SHMT1P34896 483 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 JAG1P78504 1218 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 CRHR2Q13324 411 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 LOC285556D6RIA3 1793 aa21.63■■□□□ 1.05
HDAC6-225ENST00000483506 GSG1L2A8MUP6 293 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms