RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 MYO5AQ9Y4I1 1855 aaKnown RBP19■□□□□ 0.63
CCDC28B-205ENST00000483009 CXCL11O14625 94 aa18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 FKTNO75072 461 aa18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 HLA-DOAP06340 250 aa18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 ADD2P35612 726 aa18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 TAF1CQ15572 869 aaPredicted RBP18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 CTU1Q7Z7A3 348 aaKnown RBP18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 FOXP4Q8IVH2 680 aaPredicted RBP18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 ZCCHC17Q9NP64 241 aaKnown RBP18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 SAP30BPQ9UHR5 308 aaKnown RBP18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 ZHX2Q9Y6X8 837 aa18.99■□□□□ 0.63
CCDC28B-205ENST00000483009 LAMB1P07942 1786 aa18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 BTBD19C9JJ37 291 aa18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 TSHZ3Q63HK5 1081 aa18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 METTL16Q86W50 562 aaKnown RBP18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 GCC1Q96CN9 775 aa18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 ABHD8Q96I13 439 aa18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 CRNKL1Q9BZJ0 848 aaKnown RBP18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 SUPT16HQ9Y5B9 1047 aaKnown RBP18.98■□□□□ 0.63
CCDC28B-205ENST00000483009 CAP2P40123 477 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 UBE3CQ15386 1083 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 CRACR2BQ8N4Y2 399 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 EXOC6Q8TAG9 804 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 TRIM34Q9BYJ4 488 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 DNAJC18Q9H819 358 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 ZFYVE28Q9HCC9 887 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 ZBTB47Q9UFB7 747 aaPredicted RBP18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 TTC41PQ6P2S7 1318 aa18.97■□□□□ 0.63
CCDC28B-205ENST00000483009 CAPN15O75808 1086 aa18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 RRP1BQ14684 758 aaKnown RBP18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 ZSCAN25Q6NSZ9 544 aa18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 ANKRD23Q86SG2 305 aa18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 LCORLQ8N3X6 602 aa18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 OTUD7AQ8TE49 926 aaPredicted RBP18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 AFG3L2Q9Y4W6 797 aa18.96■□□□□ 0.63
CCDC28B-205ENST00000483009 A0A0G2JLL6 359 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 ERC2O15083 957 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 MOGSQ13724 837 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 SLC4A8Q2Y0W8 1093 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 SLFNL1Q499Z3 407 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 ANKRD45Q5TZF3 282 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 PRRT2Q7Z6L0 340 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 TTC6Q86TZ1 520 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 CCDC84Q86UT8 332 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 KBTBD3Q8NAB2 608 aa18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.95■□□□□ 0.62
CCDC28B-205ENST00000483009 GLRX3O76003 335 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-205ENST00000483009 MBD4O95243 580 aa18.94■□□□□ 0.62
CCDC28B-205ENST00000483009 TBC1D2Q9BYX2 928 aa18.94■□□□□ 0.62
CCDC28B-205ENST00000483009 EHD4Q9H223 541 aa18.94■□□□□ 0.62
CCDC28B-205ENST00000483009 ARMT1Q9H993 441 aa18.94■□□□□ 0.62
CCDC28B-205ENST00000483009 TRIM75PA6NK02 468 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 CHGBP05060 677 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 MX1P20591 662 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 FASTKD5Q7L8L6 764 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 PI4K2BQ8TCG2 481 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 SDR42E1Q8WUS8 393 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 ERO1AQ96HE7 468 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 RWDD1Q9H446 243 aaPredicted RBP18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 GINM1Q9NU53 330 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 SERPINB13Q9UIV8 391 aa18.93■□□□□ 0.62
CCDC28B-205ENST00000483009 USP17L5A8MUK1 530 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 PDHXO00330 501 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 TLR2O60603 784 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 POLR3DP05423 398 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 ASNSP08243 561 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 SP3Q02447 781 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 PKN2Q16513 984 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 GPAT2Q6NUI2 795 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 DCP1AQ9NPI6 582 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 MCM9Q9NXL9 1143 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 SALL3Q9BXA9 1300 aa18.92■□□□□ 0.62
CCDC28B-205ENST00000483009 DOCK1Q14185 1865 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 GDF11O95390 407 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 SPP2Q13103 211 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 GADL1Q6ZQY3 521 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 SMC5Q8IY18 1101 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 ZNF280CQ8ND82 737 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 AS3MTQ9HBK9 375 aa18.91■□□□□ 0.62
CCDC28B-205ENST00000483009 SIPA1L1O43166 1804 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 FOCADQ5VW36 1801 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 PRKAB2O43741 272 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 ZFYP08048 801 aaPredicted RBP18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 PLCD1P51178 756 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 JAG1P78504 1218 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 TATDN1Q6P1N9 297 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 CD99L2Q8TCZ2 262 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 PARK7Q99497 189 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 PUS7LQ9H0K6 701 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 ATP8A2Q9NTI2 1148 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 ZBTB21Q9ULJ3 1066 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 CDK5RAP2Q96SN8 1893 aa18.9■□□□□ 0.62
CCDC28B-205ENST00000483009 RNF113AO15541 343 aaKnown RBP18.89■□□□□ 0.61
CCDC28B-205ENST00000483009 LRRFIP1Q32MZ4 808 aaKnown RBP18.89■□□□□ 0.61
CCDC28B-205ENST00000483009 APPBP2Q92624 585 aa18.89■□□□□ 0.61
CCDC28B-205ENST00000483009 WDR18Q9BV38 432 aa18.89■□□□□ 0.61
CCDC28B-205ENST00000483009 SLC45A1Q9Y2W3 748 aa18.89■□□□□ 0.61
CCDC28B-205ENST00000483009 TRIM17Q9Y577 477 aa18.89■□□□□ 0.61
CCDC28B-205ENST00000483009 GABPAQ06546 454 aa18.88■□□□□ 0.61
CCDC28B-205ENST00000483009 SHROOM1Q2M3G4 852 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms