RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 DHX16O60231 1041 aaKnown RBP16.8■□□□□ 0.28
CHD3-211ENST00000481999 CCDC192P0DO97 292 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 LIFRP42702 1097 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 HSP90AA2PQ14568 343 aaPredicted RBP16.8■□□□□ 0.28
CHD3-211ENST00000481999 CKAP2LQ8IYA6 745 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 ENAHQ8N8S7 591 aaPredicted RBP16.8■□□□□ 0.28
CHD3-211ENST00000481999 ALG1Q9BT22 464 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 ZSCAN16Q9H4T2 348 aaPredicted RBP16.8■□□□□ 0.28
CHD3-211ENST00000481999 SLC44A5Q8NCS7 719 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 BICD2Q8TD16 824 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 UBAC1Q9BSL1 405 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 BRIP1Q9BX63 1249 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 CLIC4Q9Y696 253 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 CCDC88AQ3V6T2 1871 aa16.8■□□□□ 0.28
CHD3-211ENST00000481999 F8W031 263 aaPredicted RBP16.79■□□□□ 0.28
CHD3-211ENST00000481999 PPEF1O14829 653 aaPredicted RBP16.79■□□□□ 0.28
CHD3-211ENST00000481999 SRGNP10124 158 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 FBXW7Q969H0 707 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 SAP30BPQ9UHR5 308 aaKnown RBP16.79■□□□□ 0.28
CHD3-211ENST00000481999 DUOX1Q9NRD9 1551 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 GOLGA6L4A6NEF3 574 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 HOXA10P31260 410 aaPredicted RBP16.79■□□□□ 0.28
CHD3-211ENST00000481999 SEC23AQ15436 765 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 TGFBRAP1Q8WUH2 860 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 CRNKL1Q9BZJ0 848 aaKnown RBP16.79■□□□□ 0.28
CHD3-211ENST00000481999 KIF3AQ9Y496 699 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 MYH15Q9Y2K3 1946 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 ECM29Q5VYK3 1845 aa16.79■□□□□ 0.28
CHD3-211ENST00000481999 MFSD14BQ5SR56 506 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 ZNF654Q8IZM8 581 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 ESR2Q92731 530 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 NUP62CLQ9H1M0 184 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 ANAPC4Q9UJX5 808 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 PDS5AQ29RF7 1337 aaKnown RBP16.78■□□□□ 0.28
CHD3-211ENST00000481999 A0A087WWV3 80 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 IARSP41252 1262 aaKnown RBP16.78■□□□□ 0.28
CHD3-211ENST00000481999 MAP3K11Q16584 847 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 DOK7Q18PE1 504 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 MAPKAPK5Q8IW41 473 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 WDR66Q8TBY9 1149 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 GOLPH3LQ9H4A5 285 aa16.78■□□□□ 0.28
CHD3-211ENST00000481999 RNF41Q9H4P4 317 aaPredicted RBP16.78■□□□□ 0.28
CHD3-211ENST00000481999 ERICH2A1L162 156 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 KLRG2A4D1S0 409 aaPredicted RBP16.77■□□□□ 0.28
CHD3-211ENST00000481999 BBOX1O75936 387 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 GTF2IP78347 998 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 KIF23Q02241 960 aaPredicted RBP16.77■□□□□ 0.28
CHD3-211ENST00000481999 KRT40Q6A162 431 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 NLGN1Q8N2Q7 840 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 ERCC4Q92889 916 aaPredicted RBP16.77■□□□□ 0.28
CHD3-211ENST00000481999 KCNJ14Q9UNX9 436 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 PLCD1P51178 756 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 SART3Q15020 963 aaKnown RBP16.77■□□□□ 0.28
CHD3-211ENST00000481999 RTN1Q16799 776 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 ZSCAN10Q96SZ4 725 aaPredicted RBP16.77■□□□□ 0.28
CHD3-211ENST00000481999 KCNQ5Q9NR82 932 aa16.77■□□□□ 0.28
CHD3-211ENST00000481999 ATP2B4P23634 1241 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 USP5P45974 858 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 ZNF622Q969S3 477 aaKnown RBP eCLIP16.76■□□□□ 0.27
CHD3-211ENST00000481999 SHISA4Q96DD7 197 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 CRAMP1Q96RY5 1269 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 DDX19AQ9NUU7 478 aaKnown RBP16.76■□□□□ 0.27
CHD3-211ENST00000481999 PLEKHA8P1O95397 391 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 PIBF1Q8WXW3 757 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 RTFDC1Q9BY42 306 aaPredicted RBP16.76■□□□□ 0.27
CHD3-211ENST00000481999 MKRN1Q9UHC7 482 aaKnown RBP16.76■□□□□ 0.27
CHD3-211ENST00000481999 CFAP45Q9UL16 551 aa16.76■□□□□ 0.27
CHD3-211ENST00000481999 COL11A2P13942 1736 aaPredicted RBP16.76■□□□□ 0.27
CHD3-211ENST00000481999 CHRNA5P30532 468 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 BTDP43251 543 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 ME1P48163 572 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 FANCBQ8NB91 859 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 FAM200AQ8TCP9 573 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 MTMR7Q9Y216 660 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 IL1R1P14778 569 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 IFIT1BQ5T764 474 aaKnown RBP16.75■□□□□ 0.27
CHD3-211ENST00000481999 MYSM1Q5VVJ2 828 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 SYNE3Q6ZMZ3 975 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 RASGRP2Q7LDG7 609 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 NBPF11Q86T75 865 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 MPNDQ8N594 471 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.75■□□□□ 0.27
CHD3-211ENST00000481999 KIAA1551Q9HCM1 1747 aa16.75■□□□□ 0.27
CHD3-211ENST00000481999 SPTY2D1Q68D10 685 aaPredicted RBP16.74■□□□□ 0.27
CHD3-211ENST00000481999 SASS6Q6UVJ0 657 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 PODXL2Q9NZ53 605 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 RCOR1Q9UKL0 485 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 ATP6V0A2Q9Y487 856 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 PARP3Q9Y6F1 533 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 TPM3P06753 285 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 MARCKSP29966 332 aaPredicted RBP16.74■□□□□ 0.27
CHD3-211ENST00000481999 CERS5Q8N5B7 392 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 TNMDQ9H2S6 317 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 ATP8A2Q9NTI2 1148 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 PCDHA7Q9UN72 937 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 MAST2Q6P0Q8 1798 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 LTBP1Q14766 1721 aa16.74■□□□□ 0.27
CHD3-211ENST00000481999 MROH7-TTC4A0A0A0MT08 1334 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 SLURP2P0DP57 97 aa16.73■□□□□ 0.27
CHD3-211ENST00000481999 VEGFAP15692 232 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms