RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	SOX4	Q06945	474 aa	Predicted RBP	5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	HS1BP3	Q53T59	392 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	EXOSC6	Q5RKV6	272 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	SPRED2	Q7Z698	418 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	NPM2	Q86SE8	214 aa	Known RBP	5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	TMEM102	Q8N9M5	508 aa	Predicted RBP	5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	BCL7C	Q8WUZ0	217 aa	Predicted RBP	5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	BSND	Q8WZ55	320 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	KRTAP4-5	Q9BYR2	181 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	MYH16	Q9H6N6	1097 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	MRS2	Q9HD23	443 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	MLH3	Q9UHC1	1453 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	SHANK2	Q9UPX8	1470 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520	ARHGEF12	Q9NZN5	1544 aa		5.94	□□□□□ -1.46
PTCD3-212	ENST00000477520		A0A0U1RQG5	324 aa	Predicted RBP	5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520		A6NHS1	94 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	NFIC	P08651	508 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	ZNF792	Q3KQV3	632 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	OSMR	Q99650	979 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	GGNBP2	Q9H3C7	697 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	ZMYM4	Q5VZL5	1548 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	KDM5C	P41229	1560 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	HECW2	Q9P2P5	1572 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	MAST1	Q9Y2H9	1570 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	ROCK1	Q13464	1354 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	ZMYM3	Q14202	1370 aa		5.93	□□□□□ -1.46
PTCD3-212	ENST00000477520	LETM1	O95202	739 aa	Predicted RBP	5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	RRP1	P56182	461 aa	Known RBP	5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	PLCL1	Q15111	1095 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	XKR5	Q6UX68	686 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	ABTB2	Q8N961	1025 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	ZKSCAN3	Q9BRR0	538 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	NRSN2	Q9GZP1	204 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	ACTL7B	Q9Y614	415 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	ATP7A	Q04656	1500 aa		5.92	□□□□□ -1.46
PTCD3-212	ENST00000477520	CROCC2	H7BZ55	1655 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	ADGRL2	O95490	1459 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	ZFYVE16	Q7Z3T8	1539 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	DYNC1I1	O14576	645 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	FRAT2	O75474	233 aa	Predicted RBP	5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	OFD1	O75665	1012 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	CTSB	P07858	339 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	ESRRA	P11474	423 aa	Predicted RBP	5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	ADH5	P11766	374 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	RAB6A	P20340	208 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	TMEM132A	Q24JP5	1023 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	DUSP27	Q5VZP5	1158 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	CENPQ	Q7L2Z9	268 aa	Predicted RBP	5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	SOX17	Q9H6I2	414 aa	Predicted RBP	5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	RRP7BP	Q9NSQ0	103 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	SLC5A6	Q9Y289	635 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	FRMPD1	Q5SYB0	1578 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	ADGB	Q8N7X0	1667 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	KIF15	Q9NS87	1388 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	NCOA1	Q15788	1441 aa		5.91	□□□□□ -1.46
PTCD3-212	ENST00000477520	KIDINS220	Q9ULH0	1771 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	ATP10A	O60312	1499 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	PLXNC1	O60486	1568 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	INO80	Q9ULG1	1556 aa	Predicted RBP	5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	FARP2	O94887	1054 aa	Predicted RBP	5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	MCM5	P33992	734 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	GSTM4	Q03013	218 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	DMTN	Q08495	405 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	BNIP3	Q12983	259 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	SKOR2	Q2VWA4	1001 aa	Predicted RBP	5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	EDEM1	Q92611	657 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	YIPF2	Q9BWQ6	316 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	SEMA6C	Q9H3T2	930 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	SEPT3	Q9UH03	358 aa		5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.9	□□□□□ -1.46
PTCD3-212	ENST00000477520	ROCK2	O75116	1388 aa	Known RBP	5.9	□□□□□ -1.47
PTCD3-212	ENST00000477520	ARHGEF40	Q8TER5	1519 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	DUOX2	Q9NRD8	1548 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	EREG	O14944	169 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	DYNC1LI2	O43237	492 aa	Predicted RBP	5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	XRCC6	P12956	609 aa	Known RBP eCLIP	5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	CCDC173	Q0VFZ6	552 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	ELOA	Q14241	798 aa	Known RBP	5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	FAM9B	Q8IZU0	186 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	C1GALT1	Q9NS00	363 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	SLAIN2	Q9P270	581 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	DHX29	Q7Z478	1369 aa	Known RBP	5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	CCDC7	Q96M83	1385 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	HFM1	A2PYH4	1435 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	PTPRK	Q15262	1439 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	ANKRD50	Q9ULJ7	1429 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	A2M	P01023	1474 aa		5.89	□□□□□ -1.47
PTCD3-212	ENST00000477520	POLR1A	O95602	1720 aa	Predicted RBP	5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	BIN1	O00499	593 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	PDGFA	P04085	211 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	FAM193A	P78312	1265 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	DNM1	Q05193	864 aa	Known RBP	5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	SLC20A2	Q08357	652 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	MAP7	Q14244	749 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	SEZ6L2	Q6UXD5	910 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	GLIS3	Q8NEA6	775 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	ASAP3	Q8TDY4	903 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	FAM168A	Q92567	244 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	SIN3A	Q96ST3	1273 aa		5.88	□□□□□ -1.47
PTCD3-212	ENST00000477520	BHLHE41	Q9C0J9	482 aa	Predicted RBP	5.88	□□□□□ -1.47

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