RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 CAP2P40123 477 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 PRKCZQ05513 592 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 SPP2Q13103 211 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 KIF22Q14807 665 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 ARHGEF6Q15052 776 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 FASTKD5Q7L8L6 764 aaKnown RBP8.63□□□□□ -1.03
HDAC3-207ENST00000475549 NBPF11Q86T75 865 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 PARK7Q99497 189 aaKnown RBP8.63□□□□□ -1.03
HDAC3-207ENST00000475549 DNAJC18Q9H819 358 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.63□□□□□ -1.03
HDAC3-207ENST00000475549 GABRQQ9UN88 632 aa8.63□□□□□ -1.03
HDAC3-207ENST00000475549 FMNL1O95466 1100 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-207ENST00000475549 ATXN8OSP0DMR3 200 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 PRMT2P55345 433 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 DYNLL1P63167 89 aaKnown RBP8.62□□□□□ -1.03
HDAC3-207ENST00000475549 OS9Q13438 667 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-207ENST00000475549 CCDC158Q5M9N0 1113 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 TTC39AQ5SRH9 613 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 NAA16Q6N069 864 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-207ENST00000475549 GADL1Q6ZQY3 521 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 METTL16Q86W50 562 aaKnown RBP8.62□□□□□ -1.03
HDAC3-207ENST00000475549 MAPKAPK5Q8IW41 473 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 SIRT2Q8IXJ6 389 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 FTSJ3Q8IY81 847 aaKnown RBP8.62□□□□□ -1.03
HDAC3-207ENST00000475549 TEX11Q8IYF3 940 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 SHISA4Q96DD7 197 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 TMEM106CQ9BVX2 250 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 ANTXR1Q9H6X2 564 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 PI4KBQ9UBF8 816 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 PALD1Q9ULE6 856 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 EXOC6BQ9Y2D4 811 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 SLC45A1Q9Y2W3 748 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 PDE4DIPQ5VU43 2346 aa8.62□□□□□ -1.03
HDAC3-207ENST00000475549 ZBED9Q6R2W3 1325 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 HMGCS2P54868 508 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 SLC4A8Q2Y0W8 1093 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 POTEEQ6S8J3 1075 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 ZNF280CQ8ND82 737 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 TGFBRAP1Q8WUH2 860 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 AGTPBP1Q9UPW5 1226 aa8.61□□□□□ -1.03
HDAC3-207ENST00000475549 FLT1P17948 1338 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 MYPNQ86TC9 1320 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 COL2A1P02458 1487 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-207ENST00000475549 USP17L5A8MUK1 530 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 PEX10O60683 326 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 BAG3O95817 575 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 CYP7A1P22680 504 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 HOXD10P28358 340 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 GRK4P32298 578 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 FLT3LGP49771 235 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 FCGRTP55899 365 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 SH3D19Q5HYK7 790 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 UBE2Q1Q7Z7E8 422 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 FOXP4Q8IVH2 680 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-207ENST00000475549 ANKRD13CQ8N6S4 541 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 MIGA1Q8NAN2 632 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 RAET1EQ8TD07 263 aa8.6□□□□□ -1.03
HDAC3-207ENST00000475549 DHX36Q9H2U1 1008 aaKnown RBP8.6□□□□□ -1.03
HDAC3-207ENST00000475549 SAP30BPQ9UHR5 308 aaKnown RBP8.6□□□□□ -1.03
HDAC3-207ENST00000475549 HERC5Q9UII4 1024 aaKnown RBP8.6□□□□□ -1.03
HDAC3-207ENST00000475549 RANBP2P49792 3224 aaKnown RBP8.6□□□□□ -1.03
HDAC3-207ENST00000475549 ZSWIM8A7E2V4 1837 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 IDH1O75874 414 aaKnown RBP8.59□□□□□ -1.03
HDAC3-207ENST00000475549 CCL5P13501 91 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 ELNP15502 786 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 BACE1P56817 501 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 AACSQ86V21 672 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 MAGEB6Q8N7X4 407 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 PROCA1Q8NCQ7 364 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-207ENST00000475549 SMCR8Q8TEV9 937 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-207ENST00000475549 WDR18Q9BV38 432 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 UNC93B1Q9H1C4 597 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 ASCC2Q9H1I8 757 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-207ENST00000475549 IL1RAPL2Q9NP60 686 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 ZBTB40Q9NUA8 1239 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 GJD2Q9UKL4 321 aa8.59□□□□□ -1.03
HDAC3-207ENST00000475549 IGSF3O75054 1194 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 GDF11O95390 407 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 GJB1P08034 283 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 PLCG2P16885 1265 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 GJA8P48165 433 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 PLCD1P51178 756 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 EVX2Q03828 476 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 MTMR2Q13614 643 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 FAM110CQ1W6H9 321 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 HABP4Q5JVS0 413 aaKnown RBP8.58□□□□□ -1.04
HDAC3-207ENST00000475549 C20orf194Q5TEA3 1177 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 RHPN1Q8TCX5 695 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 P2RX7Q99572 595 aaKnown RBP8.58□□□□□ -1.04
HDAC3-207ENST00000475549 RIOK1Q9BRS2 568 aaKnown RBP8.58□□□□□ -1.04
HDAC3-207ENST00000475549 RNF208Q9H0X6 261 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 TXNRD2Q9NNW7 524 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 COG6Q9Y2V7 657 aa8.58□□□□□ -1.04
HDAC3-207ENST00000475549 KIAA0100Q14667 2235 aaKnown RBP8.58□□□□□ -1.04
HDAC3-207ENST00000475549 H0YGN5 161 aa8.57□□□□□ -1.04
HDAC3-207ENST00000475549 TNPO2O14787 897 aaKnown RBP8.57□□□□□ -1.04
HDAC3-207ENST00000475549 ADCY3O60266 1144 aa8.57□□□□□ -1.04
HDAC3-207ENST00000475549 CHGBP05060 677 aa8.57□□□□□ -1.04
HDAC3-207ENST00000475549 ASNSP08243 561 aa8.57□□□□□ -1.04
HDAC3-207ENST00000475549 HOXA7P31268 230 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms