RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TBC1D8O95759 1140 aa6.97□□□□□ -1.29
HERC4-209ENST00000473533 MMP1P03956 469 aa6.97□□□□□ -1.29
HERC4-209ENST00000473533 ANTXR2P58335 489 aa6.97□□□□□ -1.29
HERC4-209ENST00000473533 SF3B2Q13435 895 aaKnown RBP6.97□□□□□ -1.29
HERC4-209ENST00000473533 TSR1Q2NL82 804 aaKnown RBP6.97□□□□□ -1.29
HERC4-209ENST00000473533 OTUD7BQ6GQQ9 843 aa6.97□□□□□ -1.29
HERC4-209ENST00000473533 GSDMAQ96QA5 445 aa6.97□□□□□ -1.29
HERC4-209ENST00000473533 CCDC9Q9Y3X0 531 aaKnown RBP6.97□□□□□ -1.29
HERC4-209ENST00000473533 SRPRBQ9Y5M8 271 aaKnown RBP6.97□□□□□ -1.29
HERC4-209ENST00000473533 TJP1Q07157 1748 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 CTAGE15A4D2H0 777 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 POLR3GO15318 223 aaPredicted RBP6.96□□□□□ -1.29
HERC4-209ENST00000473533 CTAGE8P0CG41 777 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 TNNT3P45378 269 aaPredicted RBP6.96□□□□□ -1.29
HERC4-209ENST00000473533 LONRF2Q1L5Z9 754 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 METTL24Q5JXM2 366 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 CTAGE6Q86UF2 777 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 TMEM139Q8IV31 216 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 CTAGE4Q8IX94 777 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 TC2NQ8N9U0 490 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 MSANTD4Q8NCY6 345 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 AIDAQ96BJ3 306 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 ISCA1Q9BUE6 129 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 PARD6BQ9BYG5 372 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 RMND1Q9NWS8 449 aa6.96□□□□□ -1.29
HERC4-209ENST00000473533 IFIT3O14879 490 aaKnown RBP6.96□□□□□ -1.3
HERC4-209ENST00000473533 SARSP49591 514 aaKnown RBP6.96□□□□□ -1.3
HERC4-209ENST00000473533 HNRNPH2P55795 449 aaKnown RBP6.96□□□□□ -1.3
HERC4-209ENST00000473533 MAP3K12Q12852 859 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 TCIRG1Q13488 830 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 ZSCAN26Q16670 478 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 RTN1Q16799 776 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 KIF4BQ2VIQ3 1234 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 LRRC24Q50LG9 513 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 FAM71BQ8TC56 605 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 NAPGQ99747 312 aaPredicted RBP6.96□□□□□ -1.3
HERC4-209ENST00000473533 SLC26A6Q9BXS9 759 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 HSD3B7Q9H2F3 369 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 RASSF4Q9H2L5 321 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 AATFQ9NY61 560 aaKnown RBP eCLIP6.96□□□□□ -1.3
HERC4-209ENST00000473533 RAB21Q9UL25 225 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 WWC3Q9ULE0 1092 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 MEGF6O75095 1541 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 DCCP43146 1447 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 SYNRGQ9UMZ2 1314 aa6.96□□□□□ -1.3
HERC4-209ENST00000473533 ANKRD18BA2A2Z9 1011 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 CKAP4Q07065 602 aaKnown RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 NR1I3Q14994 352 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 LONRF3Q496Y0 759 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 MICU3Q86XE3 530 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 RUBCNQ92622 972 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 KIFC2Q96AC6 838 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 IQCDQ96DY2 449 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 NAPBQ9H115 298 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 VIPAS39Q9H9C1 493 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 EFCC1Q9HA90 598 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 C1orf167Q5SNV9 1468 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 NWD2Q9ULI1 1742 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 A6NNZ2 444 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 PATL2C9JE40 543 aaKnown RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 MAP2K7O14733 419 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 RPS6KA5O75582 802 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 ACTN2P35609 894 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 ZAP70P43403 619 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 NT5C2P49902 561 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 IRX5P78411 483 aaPredicted RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 MDM2Q00987 491 aaPredicted RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 TUBB8Q3ZCM7 444 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 SLC9C2Q5TAH2 1124 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 CYP26C1Q6V0L0 522 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 IGSF22Q8N9C0 903 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 DPF2Q92785 391 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 AXIN2Q9Y2T1 843 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 A0A087WWV3 80 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 TRIM75PA6NK02 468 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 CSF1RP07333 972 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 CALM1P0DP23 149 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 CALM2P0DP24 149 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 CALM3P0DP25 149 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 PCP11498 1178 aaKnown RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 WTAPQ15007 396 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 MFSD6Q6ZSS7 791 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 RASGRP2Q7LDG7 609 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 DIS3L2Q8IYB7 885 aaKnown RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 FAM177A1Q8N128 213 aaPredicted RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 ZBTB38Q8NAP3 1195 aaPredicted RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 BBXQ8WY36 941 aaPredicted RBP6.95□□□□□ -1.3
HERC4-209ENST00000473533 FUT8Q9BYC5 575 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 UBR2Q8IWV8 1755 aa6.95□□□□□ -1.3
HERC4-209ENST00000473533 POLR2DO15514 142 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 IPO7O95373 1038 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 FECHP22830 423 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 SPATA20Q8TB22 786 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 DHX58Q96C10 678 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 RNF26Q9BY78 433 aaPredicted RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 CNNM1Q9NRU3 951 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 RBM28Q9NW13 759 aaKnown RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 FBXO2Q9UK22 296 aaPredicted RBP6.94□□□□□ -1.3
HERC4-209ENST00000473533 ADGRG1Q9Y653 693 aa6.94□□□□□ -1.3
HERC4-209ENST00000473533 UBN2Q6ZU65 1347 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms