RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ATAD5Q96QE3 1844 aa20.41■□□□□ 0.86
USP40-212ENST00000473191 JAG1P78504 1218 aa20.41■□□□□ 0.86
USP40-212ENST00000473191 SLC4A8Q2Y0W8 1093 aa20.41■□□□□ 0.86
USP40-212ENST00000473191 RHPN1Q8TCX5 695 aa20.41■□□□□ 0.86
USP40-212ENST00000473191 COL2A1P02458 1487 aaPredicted RBP20.41■□□□□ 0.86
USP40-212ENST00000473191 FOCADQ5VW36 1801 aa20.41■□□□□ 0.86
USP40-212ENST00000473191 IDH1O75874 414 aaKnown RBP20.4■□□□□ 0.86
USP40-212ENST00000473191 FLT1P17948 1338 aa20.4■□□□□ 0.86
USP40-212ENST00000473191 MKI67P46013 3256 aaKnown RBP20.4■□□□□ 0.86
USP40-212ENST00000473191 PPP4CP60510 307 aa20.4■□□□□ 0.86
USP40-212ENST00000473191 GADL1Q6ZQY3 521 aa20.4■□□□□ 0.86
USP40-212ENST00000473191 MIGA1Q8NAN2 632 aa20.4■□□□□ 0.86
USP40-212ENST00000473191 ARMC5Q96C12 935 aa20.4■□□□□ 0.86
USP40-212ENST00000473191 DNAJC18Q9H819 358 aa20.4■□□□□ 0.86
USP40-212ENST00000473191 MYCP01106 439 aaPredicted RBP20.39■□□□□ 0.85
USP40-212ENST00000473191 CYP7A1P22680 504 aa20.39■□□□□ 0.85
USP40-212ENST00000473191 TRIM47Q96LD4 638 aa20.39■□□□□ 0.85
USP40-212ENST00000473191 SAP30BPQ9UHR5 308 aaKnown RBP20.39■□□□□ 0.85
USP40-212ENST00000473191 PALD1Q9ULE6 856 aa20.39■□□□□ 0.85
USP40-212ENST00000473191 BAG3O95817 575 aa20.38■□□□□ 0.85
USP40-212ENST00000473191 MAP4K4O95819 1239 aaPredicted RBP20.38■□□□□ 0.85
USP40-212ENST00000473191 TREML2Q5T2D2 321 aa20.38■□□□□ 0.85
USP40-212ENST00000473191 MAGEB6Q8N7X4 407 aa20.38■□□□□ 0.85
USP40-212ENST00000473191 SH3TC2Q8TF17 1288 aa20.38■□□□□ 0.85
USP40-212ENST00000473191 NOL10Q9BSC4 688 aaKnown RBP20.38■□□□□ 0.85
USP40-212ENST00000473191 DDX19BQ9UMR2 479 aa20.38■□□□□ 0.85
USP40-212ENST00000473191 BCRP11274 1271 aa20.37■□□□□ 0.85
USP40-212ENST00000473191 EN2P19622 333 aaPredicted RBP20.37■□□□□ 0.85
USP40-212ENST00000473191 CAP2P40123 477 aa20.37■□□□□ 0.85
USP40-212ENST00000473191 PSMC4P43686 418 aa20.37■□□□□ 0.85
USP40-212ENST00000473191 ERC1Q8IUD2 1116 aa20.37■□□□□ 0.85
USP40-212ENST00000473191 ZNF333Q96JL9 665 aa20.37■□□□□ 0.85
USP40-212ENST00000473191 MS4A1P11836 297 aa20.36■□□□□ 0.85
USP40-212ENST00000473191 SPP2Q13103 211 aa20.36■□□□□ 0.85
USP40-212ENST00000473191 RPAP2Q8IXW5 612 aaPredicted RBP20.36■□□□□ 0.85
USP40-212ENST00000473191 EDC3Q96F86 508 aaKnown RBP20.36■□□□□ 0.85
USP40-212ENST00000473191 PI4KBQ9UBF8 816 aa20.36■□□□□ 0.85
USP40-212ENST00000473191 OSBPP22059 807 aa20.35■□□□□ 0.85
USP40-212ENST00000473191 KIF22Q14807 665 aa20.35■□□□□ 0.85
USP40-212ENST00000473191 SLC9C1Q4G0N8 1177 aa20.35■□□□□ 0.85
USP40-212ENST00000473191 FASTKD5Q7L8L6 764 aaKnown RBP20.35■□□□□ 0.85
USP40-212ENST00000473191 PARK7Q99497 189 aaKnown RBP20.35■□□□□ 0.85
USP40-212ENST00000473191 RBBP6Q7Z6E9 1792 aaKnown RBP20.35■□□□□ 0.85
USP40-212ENST00000473191 GDF11O95390 407 aa20.34■□□□□ 0.85
USP40-212ENST00000473191 SLFNL1Q499Z3 407 aa20.34■□□□□ 0.85
USP40-212ENST00000473191 LOC285556D6RIA3 1793 aa20.34■□□□□ 0.85
USP40-212ENST00000473191 MGAMO43451 1857 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 PLCG2P16885 1265 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 HMGCS2P54868 508 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 EVX2Q03828 476 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 METTL16Q86W50 562 aaKnown RBP20.33■□□□□ 0.85
USP40-212ENST00000473191 ZNF280CQ8ND82 737 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 KIF1BPQ96EK5 621 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 DHX36Q9H2U1 1008 aaKnown RBP20.33■□□□□ 0.85
USP40-212ENST00000473191 HERC5Q9UII4 1024 aaKnown RBP20.33■□□□□ 0.85
USP40-212ENST00000473191 GABRQQ9UN88 632 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 AGTPBP1Q9UPW5 1226 aa20.33■□□□□ 0.85
USP40-212ENST00000473191 FMNL1O95466 1100 aaPredicted RBP20.32■□□□□ 0.84
USP40-212ENST00000473191 CHGBP05060 677 aa20.32■□□□□ 0.84
USP40-212ENST00000473191 ARHGEF6Q15052 776 aa20.32■□□□□ 0.84
USP40-212ENST00000473191 HSP90AB4PQ58FF6 505 aa20.32■□□□□ 0.84
USP40-212ENST00000473191 DNAJC2Q99543 621 aaKnown RBP20.32■□□□□ 0.84
USP40-212ENST00000473191 RIOK1Q9BRS2 568 aaKnown RBP20.32■□□□□ 0.84
USP40-212ENST00000473191 SRRDQ9UH36 339 aa20.32■□□□□ 0.84
USP40-212ENST00000473191 MYH1P12882 1939 aa20.31■□□□□ 0.84
USP40-212ENST00000473191 USP17L5A8MUK1 530 aa20.31■□□□□ 0.84
USP40-212ENST00000473191 PRKCZQ05513 592 aa20.31■□□□□ 0.84
USP40-212ENST00000473191 MTFR1Q15390 333 aa20.31■□□□□ 0.84
USP40-212ENST00000473191 CLASRPQ8N2M8 674 aaKnown RBP20.31■□□□□ 0.84
USP40-212ENST00000473191 SLC45A1Q9Y2W3 748 aa20.31■□□□□ 0.84
USP40-212ENST00000473191 MYPNQ86TC9 1320 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 GOLIM4O00461 696 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 SMARCA5O60264 1052 aaPredicted RBP20.3■□□□□ 0.84
USP40-212ENST00000473191 PEX10O60683 326 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 HMMRO75330 724 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 MAP3K12Q12852 859 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 MTMR2Q13614 643 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 CRACR2BQ8N4Y2 399 aaPredicted RBP20.3■□□□□ 0.84
USP40-212ENST00000473191 ANKRD13CQ8N6S4 541 aa20.3■□□□□ 0.84
USP40-212ENST00000473191 GNRH1P01148 92 aa20.29■□□□□ 0.84
USP40-212ENST00000473191 IFIT2P09913 472 aaKnown RBP20.29■□□□□ 0.84
USP40-212ENST00000473191 PDE6AP16499 860 aa20.29■□□□□ 0.84
USP40-212ENST00000473191 USP5P45974 858 aa20.29■□□□□ 0.84
USP40-212ENST00000473191 FOXP4Q8IVH2 680 aaPredicted RBP20.29■□□□□ 0.84
USP40-212ENST00000473191 SMCR8Q8TEV9 937 aaPredicted RBP20.29■□□□□ 0.84
USP40-212ENST00000473191 BOLA2Q9H3K6 86 aa20.29■□□□□ 0.84
USP40-212ENST00000473191 DDX60LQ5H9U9 1706 aaKnown RBP20.29■□□□□ 0.84
USP40-212ENST00000473191 TCRBV5S4A2TA0A5A2 114 aa20.28■□□□□ 0.84
USP40-212ENST00000473191 PLCD1P51178 756 aa20.28■□□□□ 0.84
USP40-212ENST00000473191 PDE3AQ14432 1141 aa20.28■□□□□ 0.84
USP40-212ENST00000473191 SH3D19Q5HYK7 790 aa20.28■□□□□ 0.84
USP40-212ENST00000473191 SLC9C2Q5TAH2 1124 aa20.28■□□□□ 0.84
USP40-212ENST00000473191 NBPF11Q86T75 865 aa20.28■□□□□ 0.84
USP40-212ENST00000473191 PROCA1Q8NCQ7 364 aaPredicted RBP20.28■□□□□ 0.84
USP40-212ENST00000473191 ZNF532Q9HCE3 1301 aa20.27■□□□□ 0.84
USP40-212ENST00000473191 IGSF3O75054 1194 aa20.27■□□□□ 0.84
USP40-212ENST00000473191 RAB11FIP3O75154 756 aa20.27■□□□□ 0.84
USP40-212ENST00000473191 FCGRTP55899 365 aa20.27■□□□□ 0.84
USP40-212ENST00000473191 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.27■□□□□ 0.84
USP40-212ENST00000473191 ZBTB21Q9ULJ3 1066 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms