RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 ADH5P11766 374 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 MAPK8P45983 427 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 FCGRTP55899 365 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 PTPN12Q05209 780 aaKnown RBP2.76□□□□□ -1.97
UBXN4-207ENST00000471246 FMR1Q06787 632 aaKnown RBP eCLIP2.76□□□□□ -1.97
UBXN4-207ENST00000471246 FAAP100Q0VG06 881 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 EFEMP1Q12805 493 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 ENOX2Q16206 610 aaKnown RBP2.76□□□□□ -1.97
UBXN4-207ENST00000471246 TMEM67Q5HYA8 995 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 HP1BP3Q5SSJ5 553 aaPredicted RBP2.76□□□□□ -1.97
UBXN4-207ENST00000471246 ANGEL2Q5VTE6 544 aaKnown RBP2.76□□□□□ -1.97
UBXN4-207ENST00000471246 DTHD1Q6ZMT9 781 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 KIRREL1Q96J84 757 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 ASB16Q96NS5 453 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 CORO1BQ9BR76 489 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 YIPF2Q9BWQ6 316 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 NLRP2Q9NX02 1062 aa2.76□□□□□ -1.97
UBXN4-207ENST00000471246 GPN3Q9UHW5 284 aaPredicted RBP2.76□□□□□ -1.97
UBXN4-207ENST00000471246 DYNC1LI2O43237 492 aaPredicted RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 ZNF157P51786 506 aaPredicted RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 ZXDAP98168 799 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 SOX4Q06945 474 aaPredicted RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 AP3B2Q13367 1082 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 MAP7Q14244 749 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 PDE3AQ14432 1141 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 SPATS1Q496A3 300 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 LARP7Q4G0J3 582 aaKnown RBP eCLIP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 RPS26P11Q5JNZ5 115 aaPredicted RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 AKAP4Q5JQC9 854 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 EXOSC6Q5RKV6 272 aaKnown RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 ZSCAN29Q8IWY8 852 aaPredicted RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 SLC16A11Q8NCK7 471 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 DDX54Q8TDD1 881 aaKnown RBP2.75□□□□□ -1.97
UBXN4-207ENST00000471246 FBF1Q8TES7 1133 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 SETDB2Q96T68 719 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 WDR18Q9BV38 432 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 BCO2Q9BYV7 579 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 SEMA6CQ9H3T2 930 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 AP4E1Q9UPM8 1137 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 ACTL7BQ9Y614 415 aa2.75□□□□□ -1.97
UBXN4-207ENST00000471246 OTOL1A6NHN0 477 aaPredicted RBP2.74□□□□□ -1.97
UBXN4-207ENST00000471246 PATL2C9JE40 543 aaKnown RBP2.74□□□□□ -1.97
UBXN4-207ENST00000471246 AOC2O75106 756 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 P4HBP07237 508 aaKnown RBP2.74□□□□□ -1.97
UBXN4-207ENST00000471246 XRCC5P13010 732 aaKnown RBP2.74□□□□□ -1.97
UBXN4-207ENST00000471246 RAB6AP20340 208 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 TGM1P22735 817 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 ATP2B2Q01814 1243 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 PLCB3Q01970 1234 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 NXPE4Q6UWF7 544 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 C3orf58Q8NDZ4 430 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 KCNN1Q92952 543 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 HRASLS5Q96KN8 279 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 SORCS2Q96PQ0 1159 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 ZFYVE1Q9HBF4 777 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 DCP1AQ9NPI6 582 aaPredicted RBP2.74□□□□□ -1.97
UBXN4-207ENST00000471246 PLAGL2Q9UPG8 496 aa2.74□□□□□ -1.97
UBXN4-207ENST00000471246 TMPRSS2O15393 492 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 GSTP1P09211 210 aaKnown RBP2.73□□□□□ -1.97
UBXN4-207ENST00000471246 LIG1P18858 919 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 TNFRSF1AP19438 455 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 GSTT1P30711 240 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 PPP2R3AQ06190 1150 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 IFI16Q16666 785 aaKnown RBP2.73□□□□□ -1.97
UBXN4-207ENST00000471246 CYP27C1Q4G0S4 372 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 ALG1LQ6GMV1 187 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 SND1Q7KZF4 910 aaKnown RBP eCLIP2.73□□□□□ -1.97
UBXN4-207ENST00000471246 DYMQ7RTS9 669 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 SULF2Q8IWU5 870 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 STK35Q8TDR2 534 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 WDR89Q96FK6 387 aaPredicted RBP2.73□□□□□ -1.97
UBXN4-207ENST00000471246 ZC3H12CQ9C0D7 883 aaKnown RBP2.73□□□□□ -1.97
UBXN4-207ENST00000471246 EPB41L4BQ9H329 900 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 CCDC86Q9H6F5 360 aaKnown RBP2.73□□□□□ -1.97
UBXN4-207ENST00000471246 RAD18Q9NS91 495 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 FAM105AQ9NUU6 356 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 TMEM39AQ9NV64 488 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 SRRDQ9UH36 339 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 WWC3Q9ULE0 1092 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 AKAP2Q9Y2D5 859 aa2.73□□□□□ -1.97
UBXN4-207ENST00000471246 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.72□□□□□ -1.97
UBXN4-207ENST00000471246 ZNF862O60290 1169 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 FBXO24O75426 580 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 FSHBP01225 129 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 ASPAP45381 313 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 HNRNPUQ00839 825 aaKnown RBP eCLIP2.72□□□□□ -1.97
UBXN4-207ENST00000471246 HNRNPA0Q13151 305 aaKnown RBP2.72□□□□□ -1.97
UBXN4-207ENST00000471246 KIF4BQ2VIQ3 1234 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 TPTE2Q6XPS3 522 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 PDZD3Q86UT5 571 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 AEBP1Q8IUX7 1158 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 KCNB2Q92953 911 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 NECAB3Q96P71 396 aaPredicted RBP2.72□□□□□ -1.97
UBXN4-207ENST00000471246 OSBPL7Q9BZF2 842 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 SRCIN1Q9C0H9 1055 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 GSX1Q9H4S2 264 aaPredicted RBP2.72□□□□□ -1.97
UBXN4-207ENST00000471246 C12orf49Q9H741 205 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 KRT82Q9NSB4 513 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 PPP4R2Q9NY27 417 aa2.72□□□□□ -1.97
UBXN4-207ENST00000471246 PPP1R9AQ9ULJ8 1098 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms