RNA–Protein interactions for RNA: ENST00000470338.1

TOP3B-215, Transcript of DNA topoisomerase III beta, humanhuman

TSL 5

Gene TOP3B, Length 624 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-215ENST00000470338 FOXP4Q8IVH2 680 aaPredicted RBP17.13■□□□□ 0.33
TOP3B-215ENST00000470338 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.13■□□□□ 0.336e-14■■■□□ 17.1
TOP3B-215ENST00000470338 R3HDMLQ9H3Y0 253 aa17.13■□□□□ 0.33
TOP3B-215ENST00000470338 PALD1Q9ULE6 856 aa17.13■□□□□ 0.33
TOP3B-215ENST00000470338 KCNH4Q9UQ05 1017 aa17.13■□□□□ 0.33
TOP3B-215ENST00000470338 TTC41PQ6P2S7 1318 aa17.13■□□□□ 0.33
TOP3B-215ENST00000470338 FAM196BA6NMK8 535 aa17.12■□□□□ 0.33
TOP3B-215ENST00000470338 CETPP11597 493 aa17.12■□□□□ 0.33
TOP3B-215ENST00000470338 PTPRAP18433 802 aa17.12■□□□□ 0.33
TOP3B-215ENST00000470338 IFFO2Q5TF58 517 aa17.12■□□□□ 0.33
TOP3B-215ENST00000470338 RWDD1Q9H446 243 aaPredicted RBP17.12■□□□□ 0.33
TOP3B-215ENST00000470338 DDX60LQ5H9U9 1706 aaKnown RBP17.12■□□□□ 0.33
TOP3B-215ENST00000470338 NAV1Q8NEY1 1877 aa17.12■□□□□ 0.33
TOP3B-215ENST00000470338 GPR25O00155 361 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 USP5P45974 858 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 UBE3CQ15386 1083 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 ANKRD45Q5TZF3 282 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 TSHZ3Q63HK5 1081 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 ZSCAN25Q6NSZ9 544 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 PI4K2BQ8TCG2 481 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 OTUD7AQ8TE49 926 aaPredicted RBP17.11■□□□□ 0.33
TOP3B-215ENST00000470338 PICK1Q9NRD5 415 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 SALL3Q9BXA9 1300 aa17.11■□□□□ 0.33
TOP3B-215ENST00000470338 CXCL11O14625 94 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 RRP1BQ14684 758 aaKnown RBP17.1■□□□□ 0.33
TOP3B-215ENST00000470338 SLFNL1Q499Z3 407 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 SMC5Q8IY18 1101 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 KBTBD3Q8NAB2 608 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 ZNF296Q8WUU4 475 aaPredicted RBP17.1■□□□□ 0.33
TOP3B-215ENST00000470338 CRNKL1Q9BZJ0 848 aaKnown RBP17.1■□□□□ 0.33
TOP3B-215ENST00000470338 DNAJC18Q9H819 358 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 ZCCHC17Q9NP64 241 aaKnown RBP17.1■□□□□ 0.33
TOP3B-215ENST00000470338 SAP30BPQ9UHR5 308 aaKnown RBP17.1■□□□□ 0.33
TOP3B-215ENST00000470338 AFG3L2Q9Y4W6 797 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 ZHX2Q9Y6X8 837 aa17.1■□□□□ 0.33
TOP3B-215ENST00000470338 BAZ2AQ9UIF9 1905 aaKnown RBP17.09■□□□□ 0.33
TOP3B-215ENST00000470338 BTBD19C9JJ37 291 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 ERC2O15083 957 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 IGHDP01880 384 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 CHGBP05060 677 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 HLA-DOAP06340 250 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 MX1P20591 662 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 CAP2P40123 477 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 CRHR2Q13324 411 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 MOGSQ13724 837 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 FAM43AQ8N2R8 423 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 LCORLQ8N3X6 602 aa17.09■□□□□ 0.33
TOP3B-215ENST00000470338 ZBTB47Q9UFB7 747 aaPredicted RBP17.09■□□□□ 0.33
TOP3B-215ENST00000470338 GLRX3O76003 335 aaKnown RBP17.08■□□□□ 0.32
TOP3B-215ENST00000470338 EHD4Q9H223 541 aa17.08■□□□□ 0.32
TOP3B-215ENST00000470338 ARMT1Q9H993 441 aa17.08■□□□□ 0.32
TOP3B-215ENST00000470338 STAP2Q9UGK3 403 aa17.08■□□□□ 0.32
TOP3B-215ENST00000470338 FKTNO75072 461 aa17.07■□□□□ 0.32
TOP3B-215ENST00000470338 ANKRD23Q86SG2 305 aa17.07■□□□□ 0.32
TOP3B-215ENST00000470338 TTC6Q86TZ1 520 aa17.07■□□□□ 0.32
TOP3B-215ENST00000470338 CRACR2BQ8N4Y2 399 aaPredicted RBP17.07■□□□□ 0.32
TOP3B-215ENST00000470338 DCP1AQ9NPI6 582 aaPredicted RBP17.07■□□□□ 0.32
TOP3B-215ENST00000470338 A0A0G2JLL6 359 aaPredicted RBP17.06■□□□□ 0.32
TOP3B-215ENST00000470338 MBD4O95243 580 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 DGKZQ13574 1117 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 TAF1CQ15572 869 aaPredicted RBP17.06■□□□□ 0.32
TOP3B-215ENST00000470338 TATDN1Q6P1N9 297 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 PRRT2Q7Z6L0 340 aaPredicted RBP17.06■□□□□ 0.32
TOP3B-215ENST00000470338 SDR42E1Q8WUS8 393 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 TRIM34Q9BYJ4 488 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 TBC1D2Q9BYX2 928 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 MCOLN1Q9GZU1 580 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 PUS7LQ9H0K6 701 aaKnown RBP17.06■□□□□ 0.32
TOP3B-215ENST00000470338 ZFYVE28Q9HCC9 887 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 GINM1Q9NU53 330 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.06■□□□□ 0.32
TOP3B-215ENST00000470338 SERPINB13Q9UIV8 391 aa17.06■□□□□ 0.32
TOP3B-215ENST00000470338 RNF113AO15541 343 aaKnown RBP17.05■□□□□ 0.32
TOP3B-215ENST00000470338 PRKAB2O43741 272 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 ZFYP08048 801 aaPredicted RBP17.05■□□□□ 0.32
TOP3B-215ENST00000470338 PLCD1P51178 756 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 PDE1AP54750 535 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 JAG1P78504 1218 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 SLC4A8Q2Y0W8 1093 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 GPAT2Q6NUI2 795 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 CTU1Q7Z7A3 348 aaKnown RBP17.05■□□□□ 0.32
TOP3B-215ENST00000470338 ATP8A2Q9NTI2 1148 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 MCM9Q9NXL9 1143 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 MYH8P13535 1937 aa17.05■□□□□ 0.32
TOP3B-215ENST00000470338 USP17L5A8MUK1 530 aa17.04■□□□□ 0.32
TOP3B-215ENST00000470338 POLR3DP05423 398 aaPredicted RBP17.04■□□□□ 0.32
TOP3B-215ENST00000470338 ASNSP08243 561 aa17.04■□□□□ 0.32
TOP3B-215ENST00000470338 NUCB1Q02818 461 aa17.04■□□□□ 0.32
TOP3B-215ENST00000470338 FASTKD5Q7L8L6 764 aaKnown RBP17.04■□□□□ 0.32
TOP3B-215ENST00000470338 CCDC84Q86UT8 332 aaPredicted RBP17.04■□□□□ 0.32
TOP3B-215ENST00000470338 LOC285556D6RIA3 1793 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 TRIM75PA6NK02 468 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 PDHXO00330 501 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 TLR2O60603 784 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 IRX6P78412 446 aaPredicted RBP17.03■□□□□ 0.32
TOP3B-215ENST00000470338 GABPAQ06546 454 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 SPP2Q13103 211 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 LRRFIP1Q32MZ4 808 aaKnown RBP17.03■□□□□ 0.32
TOP3B-215ENST00000470338 B4GALNT3Q6L9W6 998 aa17.03■□□□□ 0.32
TOP3B-215ENST00000470338 CHD1LQ86WJ1 897 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms