RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 DSCC1Q9BVC3 393 aa17.67■□□□□ 0.42
COL9A3-209ENST00000469852 NAPBQ9H115 298 aa17.67■□□□□ 0.42
COL9A3-209ENST00000469852 DHX36Q9H2U1 1008 aaKnown RBP17.67■□□□□ 0.42
COL9A3-209ENST00000469852 ALX1Q15699 326 aa17.66■□□□□ 0.42
COL9A3-209ENST00000469852 SUPT20HL1Q3ZLR7 823 aa17.66■□□□□ 0.42
COL9A3-209ENST00000469852 C8orf34Q49A92 452 aa17.66■□□□□ 0.42
COL9A3-209ENST00000469852 SBK1Q52WX2 424 aa17.66■□□□□ 0.42
COL9A3-209ENST00000469852 NACAP1Q9BZK3 213 aa17.66■□□□□ 0.42
COL9A3-209ENST00000469852 ARPP21Q9UBL0 812 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-209ENST00000469852 TACC3Q9Y6A5 838 aa17.66■□□□□ 0.42
COL9A3-209ENST00000469852 MINDY4BA8MYZ0 360 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 USP2O75604 605 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-209ENST00000469852 HLA-DOAP06340 250 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 MAP3K10Q02779 954 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 GABPAQ06546 454 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 RRP1BQ14684 758 aaKnown RBP17.65■□□□□ 0.42
COL9A3-209ENST00000469852 METTL16Q86W50 562 aaKnown RBP17.65■□□□□ 0.42
COL9A3-209ENST00000469852 TNS4Q8IZW8 715 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 STK11IPQ8N1F8 1099 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 SLC44A5Q8NCS7 719 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 DDRGK1Q96HY6 314 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 NBPF3Q9H094 633 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 ANO2Q9NQ90 1003 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 PI4KBQ9UBF8 816 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 ZMYM6O95789 1325 aa17.65■□□□□ 0.42
COL9A3-209ENST00000469852 HAND2P61296 217 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 CTDSPL2Q05D32 466 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 PPARAQ07869 468 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 TTC6Q86TZ1 520 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 MAP4K1Q92918 833 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 EHD4Q9H223 541 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 GBA2Q9HCG7 927 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-209ENST00000469852 ROBO3Q96MS0 1386 aa17.64■□□□□ 0.41
COL9A3-209ENST00000469852 MYH8P13535 1937 aa17.63■□□□□ 0.41
COL9A3-209ENST00000469852 SEC24BO95487 1268 aa17.63■□□□□ 0.41
COL9A3-209ENST00000469852 NF2P35240 595 aa17.63■□□□□ 0.41
COL9A3-209ENST00000469852 SHROOM1Q2M3G4 852 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-209ENST00000469852 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.63■□□□□ 0.41
COL9A3-209ENST00000469852 INCENPQ9NQS7 918 aa17.63■□□□□ 0.41
COL9A3-209ENST00000469852 SERPINB13Q9UIV8 391 aa17.63■□□□□ 0.41
COL9A3-209ENST00000469852 ANGEL1Q9UNK9 670 aaKnown RBP17.63■□□□□ 0.41
COL9A3-209ENST00000469852 RBM8AQ9Y5S9 174 aaKnown RBP17.63■□□□□ 0.41
COL9A3-209ENST00000469852 TAF6LQ9Y6J9 622 aa17.63■□□□□ 0.41
COL9A3-209ENST00000469852 PHF20L1A8MW92 1017 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 UBE2Q2LH0YL09 131 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 TBC1D12O60347 775 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 INPP5BP32019 993 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 SHMT1P34896 483 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 JAG1P78504 1218 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 TTLL12Q14166 644 aaPredicted RBP17.62■□□□□ 0.41
COL9A3-209ENST00000469852 KIAA1211Q6ZU35 1233 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 C16orf86Q6ZW13 317 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 FOXP4Q8IVH2 680 aaPredicted RBP17.62■□□□□ 0.41
COL9A3-209ENST00000469852 CRACR2BQ8N4Y2 399 aaPredicted RBP17.62■□□□□ 0.41
COL9A3-209ENST00000469852 ZNF341Q9BYN7 854 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 HERC5Q9UII4 1024 aaKnown RBP17.62■□□□□ 0.41
COL9A3-209ENST00000469852 ATAD5Q96QE3 1844 aa17.62■□□□□ 0.41
COL9A3-209ENST00000469852 CDK8P49336 464 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 MAP3K11Q16584 847 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 DCAF15Q66K64 600 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 TBC1D10CQ8IV04 446 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL9A3-209ENST00000469852 NKX2-3Q8TAU0 364 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 WRNIP1Q96S55 665 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.61■□□□□ 0.41
COL9A3-209ENST00000469852 ZNF112Q9UJU3 913 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 ANAPC4Q9UJX5 808 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 U3KPZ7 1027 aaPredicted RBP17.61■□□□□ 0.41
COL9A3-209ENST00000469852 DOCK1Q14185 1865 aa17.61■□□□□ 0.41
COL9A3-209ENST00000469852 PPP1R12BO60237 982 aaPredicted RBP17.6■□□□□ 0.41
COL9A3-209ENST00000469852 PRDM1O75626 825 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 CAPN15O75808 1086 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 CYP21A2P08686 494 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 TATDN1Q6P1N9 297 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.6■□□□□ 0.41
COL9A3-209ENST00000469852 AMOTL1Q8IY63 956 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 C2orf69Q8N8R5 385 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 ZKSCAN4Q969J2 545 aaPredicted RBP17.6■□□□□ 0.41
COL9A3-209ENST00000469852 HOOK2Q96ED9 719 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 CLMNQ96JQ2 1002 aa17.6■□□□□ 0.41
COL9A3-209ENST00000469852 TMEM88BA6NKF7 163 aa17.59■□□□□ 0.41
COL9A3-209ENST00000469852 GDF11O95390 407 aa17.59■□□□□ 0.41
COL9A3-209ENST00000469852 LDLRAD1Q5T700 205 aa17.59■□□□□ 0.41
COL9A3-209ENST00000469852 ARMC9Q7Z3E5 817 aa17.59■□□□□ 0.41
COL9A3-209ENST00000469852 TRIM34Q9BYJ4 488 aa17.59■□□□□ 0.41
COL9A3-209ENST00000469852 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.59■□□□□ 0.41
COL9A3-209ENST00000469852 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.59■□□□□ 0.41
COL9A3-209ENST00000469852 NEDD4P46934 1319 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 ZNF213O14771 459 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 IREB2P48200 963 aaKnown RBP17.58■□□□□ 0.4
COL9A3-209ENST00000469852 FKBP1BP68106 108 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 VGLL4Q14135 290 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 NECTIN1Q15223 517 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 SAPCD2Q86UD0 394 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 CTNNA3Q9UI47 895 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 SNCAIPQ9Y6H5 919 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 TLL2Q9Y6L7 1015 aa17.58■□□□□ 0.4
COL9A3-209ENST00000469852 GREB1LQ9C091 1923 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-209ENST00000469852 PHIPQ8WWQ0 1821 aa17.57■□□□□ 0.4
COL9A3-209ENST00000469852 SLC27A2O14975 620 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms