RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 NBPF5PQ86XG9 351 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-207ENST00000468384 SUPT20HQ8NEM7 779 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 DDX12PQ92771 950 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 ALG13Q9NP73 1137 aaKnown RBP7.2□□□□□ -1.26
HMGB1-207ENST00000468384 NCAPD2Q15021 1401 aa7.19□□□□□ -1.26
HMGB1-207ENST00000468384 TEX15Q9BXT5 2789 aa7.19□□□□□ -1.26
HMGB1-207ENST00000468384 LAMB1P07942 1786 aa7.19□□□□□ -1.26
HMGB1-207ENST00000468384 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-207ENST00000468384 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-207ENST00000468384 MAP3K7O43318 606 aa7.19□□□□□ -1.26
HMGB1-207ENST00000468384 ADCY3O60266 1144 aa7.19□□□□□ -1.26
HMGB1-207ENST00000468384 ELNP15502 786 aa7.19□□□□□ -1.26
HMGB1-207ENST00000468384 CANXP27824 592 aaKnown RBP7.19□□□□□ -1.26
HMGB1-207ENST00000468384 GPR161Q8N6U8 529 aaKnown RBP7.19□□□□□ -1.26
HMGB1-207ENST00000468384 HELBQ8NG08 1087 aaPredicted RBP7.19□□□□□ -1.26
HMGB1-207ENST00000468384 RNPC3Q96LT9 517 aaKnown RBP7.19□□□□□ -1.26
HMGB1-207ENST00000468384 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.19□□□□□ -1.262e-6■■■■□ 20
HMGB1-207ENST00000468384 DDX60LQ5H9U9 1706 aaKnown RBP7.18□□□□□ -1.26
HMGB1-207ENST00000468384 COL6A1P12109 1028 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 PODNQ7Z5L7 613 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 GPIHBP1Q8IV16 184 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 FAM178BQ8IXR5 827 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 RTFDC1Q9BY42 306 aaPredicted RBP7.18□□□□□ -1.26
HMGB1-207ENST00000468384 PRKAG2Q9UGJ0 569 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 FZD1Q9UP38 647 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 SMG1Q96Q15 3661 aaKnown RBP7.18□□□□□ -1.26
HMGB1-207ENST00000468384 A0A1W2PP64 1363 aa7.18□□□□□ -1.26
HMGB1-207ENST00000468384 PIEZO2Q9H5I5 2752 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 WDHD1O75717 1129 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-207ENST00000468384 FBLN1P23142 703 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 CABP4P57796 275 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 FAM43AQ8N2R8 423 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 BRI3BPQ8WY22 251 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 FSD1Q9BTV5 496 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 TBC1D2BQ9UPU7 963 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 SBNO2Q9Y2G9 1366 aa7.17□□□□□ -1.26
HMGB1-207ENST00000468384 H0Y858 1186 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 PKN1Q16512 942 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 CRY2Q49AN0 593 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 NBPF10Q6P3W6 841 aaKnown RBP7.16□□□□□ -1.26
HMGB1-207ENST00000468384 PRR23BQ6ZRT6 265 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 SP8Q8IXZ3 490 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 PXYLP1Q8TE99 480 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 BADQ92934 168 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 HLA-CQ95604 372 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 TLR9Q9NR96 1032 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 DLL3Q9NYJ7 618 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 OGDHLQ9ULD0 1010 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 GABRQQ9UN88 632 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 JAG2Q9Y219 1238 aa7.16□□□□□ -1.26
HMGB1-207ENST00000468384 CFAP46Q8IYW2 2715 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 NBEAQ8NFP9 2946 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 PRRC2BQ5JSZ5 2229 aaKnown RBP7.15□□□□□ -1.26
HMGB1-207ENST00000468384 BRWD1Q9NSI6 2320 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 SPTA1P02549 2419 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 NBL1P41271 181 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 ZNF280AP59817 542 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-207ENST00000468384 DMWDQ09019 674 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 COL9A3Q14050 684 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-207ENST00000468384 C17orf99Q6UX52 265 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 SCARF2Q96GP6 870 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-207ENST00000468384 KDM4CQ9H3R0 1056 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 RTL1A6NKG5 1358 aa7.15□□□□□ -1.26
HMGB1-207ENST00000468384 TECTAO75443 2155 aa7.15□□□□□ -1.27
HMGB1-207ENST00000468384 FBN3Q75N90 2809 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 CCL15-CCL14A0A0B4J2E2 113 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 HOXA10P31260 410 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-207ENST00000468384 LTBP2Q14767 1821 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 CCL15Q16663 113 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 TENM4Q6N022 2769 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 TPTE2Q6XPS3 522 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 BMP8AQ7Z5Y6 402 aa7.14□□□□□ -1.27
HMGB1-207ENST00000468384 KRI1Q8N9T8 703 aaKnown RBP7.14□□□□□ -1.27
HMGB1-207ENST00000468384 NKD2Q969F2 451 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-207ENST00000468384 TMX4Q9H1E5 349 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-207ENST00000468384 SPTAN1Q13813 2472 aaKnown RBP7.13□□□□□ -1.27
HMGB1-207ENST00000468384 AOX1Q06278 1338 aa7.13□□□□□ -1.27
HMGB1-207ENST00000468384 UNCXA6NJT0 531 aa7.13□□□□□ -1.27
HMGB1-207ENST00000468384 TRIM66O15016 1216 aa7.13□□□□□ -1.27
HMGB1-207ENST00000468384 ACTN4O43707 911 aaKnown RBP7.13□□□□□ -1.27
HMGB1-207ENST00000468384 ADRB1P08588 477 aa7.13□□□□□ -1.27
HMGB1-207ENST00000468384 DPP8Q6V1X1 898 aaPredicted RBP7.13□□□□□ -1.27
HMGB1-207ENST00000468384 RIC3Q7Z5B4 369 aa7.13□□□□□ -1.27
HMGB1-207ENST00000468384 SUGP1Q8IWZ8 645 aaKnown RBP7.13□□□□□ -1.27
HMGB1-207ENST00000468384 PBX4Q9BYU1 374 aa7.13□□□□□ -1.27
HMGB1-207ENST00000468384 DSPP15924 2871 aaKnown RBP7.13□□□□□ -1.27
HMGB1-207ENST00000468384 RTL9Q8NET4 1388 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 CAPN5O15484 640 aaPredicted RBP7.12□□□□□ -1.27
HMGB1-207ENST00000468384 COBLO75128 1261 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 PPFIA3O75145 1194 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 ITGB7P26010 798 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 ITGAEP38570 1179 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 FLT3LGP49771 235 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 PDE4DQ08499 809 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 TMC4Q7Z404 712 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 TMEFF1Q8IYR6 380 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 NFATC2IPQ8NCF5 419 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 RPGRQ92834 1020 aaKnown RBP7.12□□□□□ -1.27
HMGB1-207ENST00000468384 PBXIP1Q96AQ6 731 aa7.12□□□□□ -1.27
HMGB1-207ENST00000468384 KCNQ5Q9NR82 932 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms