RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 FAM83AQ86UY5 434 aa8.14□□□□□ -1.11
SCAF4-204ENST00000467731 TBC1D10CQ8IV04 446 aa8.14□□□□□ -1.11
SCAF4-204ENST00000467731 ZSCAN29Q8IWY8 852 aaPredicted RBP8.14□□□□□ -1.11
SCAF4-204ENST00000467731 AMOTL1Q8IY63 956 aa8.14□□□□□ -1.11
SCAF4-204ENST00000467731 ZNF526Q8TF50 670 aaPredicted RBP8.14□□□□□ -1.11
SCAF4-204ENST00000467731 TMEM39BQ9GZU3 492 aa8.14□□□□□ -1.11
SCAF4-204ENST00000467731 E7EWF7 191 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 TNFAIP1Q13829 316 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 TSGA10IPQ3SY00 556 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 EAPPQ56P03 285 aaPredicted RBP8.13□□□□□ -1.11
SCAF4-204ENST00000467731 STOX1Q6ZVD7 989 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 SH3BP5LQ7L8J4 393 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 FAM151AQ8WW52 585 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 RRAGCQ9HB90 399 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 INCENPQ9NQS7 918 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 ANAPC4Q9UJX5 808 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 TACC3Q9Y6A5 838 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 ATRNL1Q5VV63 1379 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 COL9A3Q14050 684 aaPredicted RBP8.13□□□□□ -1.11
SCAF4-204ENST00000467731 RASA3Q14644 834 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 CDAN1Q8IWY9 1227 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 DYNLL2Q96FJ2 89 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 CSRNP1Q96S65 589 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 DHX36Q9H2U1 1008 aaKnown RBP8.13□□□□□ -1.11
SCAF4-204ENST00000467731 PRDM4Q9UKN5 801 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 COL2A1P02458 1487 aaPredicted RBP8.13□□□□□ -1.11
SCAF4-204ENST00000467731 ROBO3Q96MS0 1386 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 HLA-DOAP06340 250 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 SLURP2P0DP57 97 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 TNNI2P48788 182 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 AKNAD1Q5T1N1 836 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 TTC6Q86TZ1 520 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 APOBEC3FQ8IUX4 373 aaKnown RBP8.13□□□□□ -1.11
SCAF4-204ENST00000467731 STAG1Q8WVM7 1258 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 DEFB129Q9H1M3 183 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 NMRK2Q9NPI5 230 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 BRPF3Q9ULD4 1205 aa8.13□□□□□ -1.11
SCAF4-204ENST00000467731 NEDD4P46934 1319 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 PRDM1O75626 825 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 POTEIP0CG38 1075 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 POTEJP0CG39 1038 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 VEGFAP15692 232 aaPredicted RBP8.12□□□□□ -1.11
SCAF4-204ENST00000467731 CASTP20810 708 aaKnown RBP8.12□□□□□ -1.11
SCAF4-204ENST00000467731 KRT32Q14532 448 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 MFSD6Q6ZSS7 791 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 PNMA8AQ86V59 439 aaPredicted RBP8.12□□□□□ -1.11
SCAF4-204ENST00000467731 SLC44A5Q8NCS7 719 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 IL17RAQ96F46 866 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 JAKMIP1Q96N16 626 aaKnown RBP8.12□□□□□ -1.11
SCAF4-204ENST00000467731 PI4KBQ9UBF8 816 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 SERPINB13Q9UIV8 391 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 PITPNM2Q9BZ72 1349 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 NKX2-3Q8TAU0 364 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 DCPSQ96C86 337 aaKnown RBP8.12□□□□□ -1.11
SCAF4-204ENST00000467731 NEK1Q96PY6 1258 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 UPF3BQ9BZI7 483 aaKnown RBP8.12□□□□□ -1.11
SCAF4-204ENST00000467731 TOMM22Q9NS69 142 aa8.12□□□□□ -1.11
SCAF4-204ENST00000467731 FAM196BA6NMK8 535 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 SLC3A2P08195 630 aaKnown RBP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 CPA1P15085 419 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 GABPAQ06546 454 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 PDE4BQ07343 736 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 TRDNQ13061 729 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 RRP12Q5JTH9 1297 aaKnown RBP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 PRAMEF18Q5VWM3 479 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 C16orf86Q6ZW13 317 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 ZC3H15Q8WU90 426 aaKnown RBP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 TEPSINQ96N21 525 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 RNF41Q9H4P4 317 aaPredicted RBP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 DNAJC18Q9H819 358 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 PGAP2Q9UHJ9 254 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 B4E1Z4 1266 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 FGRP09769 529 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 PSMA5P28066 241 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 CDK8P49336 464 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 DLK2Q6UY11 383 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 RALYLQ86SE5 291 aaKnown RBP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 CRACR2BQ8N4Y2 399 aaPredicted RBP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 NCOA7Q8NI08 942 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 EHD4Q9H223 541 aa8.11□□□□□ -1.11
SCAF4-204ENST00000467731 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.11□□□□□ -1.11
SCAF4-204ENST00000467731 KRT26Q7Z3Y9 468 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 SULF1Q8IWU6 871 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 TCEANC2Q96MN5 208 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 TM6SF1Q9BZW5 370 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 CNNM2Q9H8M5 875 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 MKNK2Q9HBH9 465 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 ZSWIM6Q9HCJ5 1215 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 ADM5C9JUS6 153 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 KDM4AO75164 1064 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 PCP11498 1178 aaKnown RBP8.1□□□□□ -1.11
SCAF4-204ENST00000467731 NBPF12Q5TAG4 269 aaPredicted RBP8.1□□□□□ -1.11
SCAF4-204ENST00000467731 BLOC1S2Q6QNY1 142 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 RUFY3Q7L099 469 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 MIGA2Q7L4E1 593 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 CHST3Q7LGC8 479 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 MB21D2Q8IYB1 491 aaPredicted RBP8.1□□□□□ -1.11
SCAF4-204ENST00000467731 KRT23Q9C075 422 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 CLEC11AQ9Y240 323 aa8.1□□□□□ -1.11
SCAF4-204ENST00000467731 ORC4O43929 436 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms