RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NF2P35240 595 aa18.1■□□□□ 0.49
NPHP4-205ENST00000466897 GABPAQ06546 454 aa18.1■□□□□ 0.49
NPHP4-205ENST00000466897 NBPF12Q5TAG4 269 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-205ENST00000466897 SERPINB13Q9UIV8 391 aa18.1■□□□□ 0.49
NPHP4-205ENST00000466897 PLCD1P51178 756 aa18.09■□□□□ 0.49
NPHP4-205ENST00000466897 DCAF15Q66K64 600 aa18.09■□□□□ 0.49
NPHP4-205ENST00000466897 CDAN1Q8IWY9 1227 aa18.09■□□□□ 0.49
NPHP4-205ENST00000466897 GREB1LQ9C091 1923 aaPredicted RBP18.09■□□□□ 0.49
NPHP4-205ENST00000466897 PCP11498 1178 aaKnown RBP18.08■□□□□ 0.48
NPHP4-205ENST00000466897 NT5C2P49902 561 aa18.08■□□□□ 0.48
NPHP4-205ENST00000466897 FKBP1BP68106 108 aa18.08■□□□□ 0.48
NPHP4-205ENST00000466897 PPARAQ07869 468 aa18.08■□□□□ 0.48
NPHP4-205ENST00000466897 IMMTQ16891 758 aaKnown RBP18.08■□□□□ 0.48
NPHP4-205ENST00000466897 SWAP70Q9UH65 585 aa18.08■□□□□ 0.48
NPHP4-205ENST00000466897 RBM8AQ9Y5S9 174 aaKnown RBP18.08■□□□□ 0.48
NPHP4-205ENST00000466897 TRAF5O00463 557 aa18.07■□□□□ 0.48
NPHP4-205ENST00000466897 SLC3A2P08195 630 aaKnown RBP18.07■□□□□ 0.48
NPHP4-205ENST00000466897 CYP2D6P10635 497 aa18.07■□□□□ 0.48
NPHP4-205ENST00000466897 NECTIN1Q15223 517 aa18.07■□□□□ 0.48
NPHP4-205ENST00000466897 MAP3K11Q16584 847 aa18.07■□□□□ 0.48
NPHP4-205ENST00000466897 C16orf86Q6ZW13 317 aa18.07■□□□□ 0.48
NPHP4-205ENST00000466897 ZNF287Q9HBT7 754 aa18.07■□□□□ 0.48
NPHP4-205ENST00000466897 UNCXA6NJT0 531 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 MINDY4BA8MYZ0 360 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 ZNF213O14771 459 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 PPP1R12BO60237 982 aaPredicted RBP18.06■□□□□ 0.48
NPHP4-205ENST00000466897 FGRP09769 529 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 PRAMEF18Q5VWM3 479 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 CRACR2BQ8N4Y2 399 aaPredicted RBP18.06■□□□□ 0.48
NPHP4-205ENST00000466897 ZNF341Q9BYN7 854 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 DNAJC18Q9H819 358 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 ZNF112Q9UJU3 913 aa18.06■□□□□ 0.48
NPHP4-205ENST00000466897 CYP2D7A0A087X1C5 515 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 HSPA6P17066 643 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 RNF20Q5VTR2 975 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 TATDN1Q6P1N9 297 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 STAG1Q8WVM7 1258 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 KCNB2Q92953 911 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 USP26Q9BXU7 913 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 TRIM34Q9BYJ4 488 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.05■□□□□ 0.48
NPHP4-205ENST00000466897 PHIPQ8WWQ0 1821 aa18.05■□□□□ 0.48
NPHP4-205ENST00000466897 PHF20L1A8MW92 1017 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 CYP21A2P08686 494 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 HSPA4P34932 840 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 EVX2Q03828 476 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 PDE4BQ07343 736 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 TSGA10IPQ3SY00 556 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 DLK2Q6UY11 383 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 KLRG1Q96E93 195 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 NBPF3Q9H094 633 aa18.04■□□□□ 0.48
NPHP4-205ENST00000466897 RNF41Q9H4P4 317 aaPredicted RBP18.04■□□□□ 0.48
NPHP4-205ENST00000466897 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.04■□□□□ 0.48
NPHP4-205ENST00000466897 ORC4O43929 436 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 SHMT1P34896 483 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 IREB2P48200 963 aaKnown RBP18.03■□□□□ 0.48
NPHP4-205ENST00000466897 CDK8P49336 464 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 SLC4A8Q2Y0W8 1093 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 AKNAD1Q5T1N1 836 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 CST9Q5W186 159 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 CREB3L3Q68CJ9 461 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 MIGA2Q7L4E1 593 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 ARMC9Q7Z3E5 817 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.03■□□□□ 0.48
NPHP4-205ENST00000466897 BACH2Q9BYV9 841 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 GINM1Q9NU53 330 aa18.03■□□□□ 0.48
NPHP4-205ENST00000466897 SMIM22K7EJ46 135 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 SLC27A2O14975 620 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 USP2O75604 605 aaPredicted RBP18.02■□□□□ 0.48
NPHP4-205ENST00000466897 CELF2O95319 508 aaKnown RBP18.02■□□□□ 0.48
NPHP4-205ENST00000466897 SEC24BO95487 1268 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 HAND2P61296 217 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 FMR1Q06787 632 aaKnown RBP eCLIP18.02■□□□□ 0.482e-17■■■■■ 60.8
NPHP4-205ENST00000466897 TBC1D10CQ8IV04 446 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 DYNLL2Q96FJ2 89 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 CCDC17Q96LX7 622 aa18.02■□□□□ 0.48
NPHP4-205ENST00000466897 GBA2Q9HCG7 927 aaPredicted RBP18.02■□□□□ 0.48
NPHP4-205ENST00000466897 PLIN4Q96Q06 1357 aa18.02■□□□□ 0.47
NPHP4-205ENST00000466897 CTNND1O60716 968 aaKnown RBP18.01■□□□□ 0.47
NPHP4-205ENST00000466897 MCCP23508 829 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 CTDSPL2Q05D32 466 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 NOL9Q5SY16 702 aaKnown RBP18.01■□□□□ 0.47
NPHP4-205ENST00000466897 LDLRAD1Q5T700 205 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 MFSD6Q6ZSS7 791 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 C2orf69Q8N8R5 385 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 SLC44A5Q8NCS7 719 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 CNNM2Q9H8M5 875 aa18.01■□□□□ 0.47
NPHP4-205ENST00000466897 MYH4Q9Y623 1939 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 FAM196BA6NMK8 535 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 ZKSCAN1P17029 563 aaPredicted RBP18■□□□□ 0.47
NPHP4-205ENST00000466897 RASA1P20936 1047 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 KRT32Q14532 448 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 CERKLQ49MI3 558 aaPredicted RBP18■□□□□ 0.47
NPHP4-205ENST00000466897 ANKRD13AQ8IZ07 590 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 IL17RAQ96F46 866 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 WRNIP1Q96S55 665 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 ZNF408Q9H9D4 720 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 MKNK2Q9HBH9 465 aa18■□□□□ 0.47
NPHP4-205ENST00000466897 ANGEL1Q9UNK9 670 aaKnown RBP18■□□□□ 0.47
NPHP4-205ENST00000466897 PTPRFP10586 1907 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms