RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MYH13Q9UKX3 1938 aa14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 POLA2Q14181 598 aa14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 APOBEC3HQ6NTF7 200 aaKnown RBP14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 MAFAQ8NHW3 353 aaPredicted RBP14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 FAM151AQ8WW52 585 aa14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 CDX2Q99626 313 aaPredicted RBP14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 SIL1Q9H173 461 aa14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 CEP126Q9P2H0 1117 aa14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 OGDHLQ9ULD0 1010 aa14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 PA2G4Q9UQ80 394 aaKnown RBP14.67□□□□□ -0.06
SQSTM1-206ENST00000466342 A0A0G2JLL6 359 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 HMGCRP04035 888 aa14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 SLC5A1P13866 664 aa14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 MDM2Q00987 491 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 PRRT2Q7Z6L0 340 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 CRBNQ96SW2 442 aa14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 IQSEC3Q9UPP2 1182 aaPredicted RBP14.66□□□□□ -0.06
SQSTM1-206ENST00000466342 PHIPQ8WWQ0 1821 aa14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 IL15P40933 162 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 CHAF1AQ13111 956 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 GADL1Q6ZQY3 521 aa14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 RPAP2Q8IXW5 612 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 SMCR8Q8TEV9 937 aaPredicted RBP14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 SUGT1Q9Y2Z0 365 aa14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 ZHX2Q9Y6X8 837 aa14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 PFASO15067 1338 aa14.65□□□□□ -0.06
SQSTM1-206ENST00000466342 MUC3AQ02505 3323 aa14.64□□□□□ -0.07
SQSTM1-206ENST00000466342 HHIPL2Q6UWX4 724 aa14.64□□□□□ -0.07
SQSTM1-206ENST00000466342 SEMA6BQ9H3T3 888 aa14.64□□□□□ -0.07
SQSTM1-206ENST00000466342 PLXNB2O15031 1838 aa14.64□□□□□ -0.07
SQSTM1-206ENST00000466342 TRIM32Q13049 653 aa14.63□□□□□ -0.07
SQSTM1-206ENST00000466342 ATP2B3Q16720 1220 aa14.63□□□□□ -0.07
SQSTM1-206ENST00000466342 ANKRD13CQ8N6S4 541 aa14.63□□□□□ -0.07
SQSTM1-206ENST00000466342 WDR66Q8TBY9 1149 aa14.63□□□□□ -0.07
SQSTM1-206ENST00000466342 AFG3L2Q9Y4W6 797 aa14.63□□□□□ -0.07
SQSTM1-206ENST00000466342 MAST3O60307 1309 aa14.63□□□□□ -0.07
SQSTM1-206ENST00000466342 TNFRSF10AO00220 468 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 ZBTB22O15209 634 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 HMMRO75330 724 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 COL6A1P12109 1028 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 TCP10Q12799 353 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 FAM110CQ1W6H9 321 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 SIRT2Q8IXJ6 389 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 GNL3LQ9NVN8 582 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 GJD2Q9UKL4 321 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 NOP58Q9Y2X3 529 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 DOCK2Q92608 1830 aa14.62□□□□□ -0.07
SQSTM1-206ENST00000466342 SURF6O75683 361 aaKnown RBP14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 PTPRAP18433 802 aa14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 PLA2G5P39877 138 aa14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 G3BP1Q13283 466 aaKnown RBP eCLIP14.61□□□□□ -0.072e-8■■□□□ 12.4
SQSTM1-206ENST00000466342 LRRC26Q2I0M4 334 aa14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 LBHD1Q9BQE6 289 aaPredicted RBP14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 RAPGEFL1Q9UHV5 662 aa14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 TTC28Q96AY4 2481 aa14.61□□□□□ -0.07
SQSTM1-206ENST00000466342 PHF20L1A8MW92 1017 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 SEMA3EO15041 775 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 AAMPQ13685 434 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 SCYL3Q8IZE3 742 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 MYLIPQ8WY64 445 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 PICK1Q9NRD5 415 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 AKAP2Q9Y2D5 859 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 DOCK1Q14185 1865 aa14.6□□□□□ -0.07
SQSTM1-206ENST00000466342 TFCP2Q12800 502 aa14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 OS9Q13438 667 aaPredicted RBP14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 MAP3K21Q5TCX8 1036 aa14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 FAM122AQ96E09 287 aa14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 DENND2AQ9ULE3 1009 aa14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 AGTPBP1Q9UPW5 1226 aa14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 FRMPD3Q5JV73 1810 aa14.59□□□□□ -0.07
SQSTM1-206ENST00000466342 MAST2Q6P0Q8 1798 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 GCLCP48506 637 aaPredicted RBP14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 HSP90AB4PQ58FF6 505 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 TJAP1Q5JTD0 557 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 CDC42EP5Q6NZY7 148 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 EXOC6Q8TAG9 804 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 TRIB2Q92519 343 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 PNMA3Q9UL41 463 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 EXOC6BQ9Y2D4 811 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 PCDHB15Q9Y5E8 787 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 SALL1Q9NSC2 1324 aa14.58□□□□□ -0.08
SQSTM1-206ENST00000466342 CDH23Q9H251 3354 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 LTBP2Q14767 1821 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 CENPBP07199 599 aaPredicted RBP14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 PHKA1P46020 1223 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 TIMM10P62072 90 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 NFIAQ12857 509 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 CCDC102BQ68D86 513 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 ERC1Q8IUD2 1116 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 FAM198AQ9UFP1 575 aa14.57□□□□□ -0.08
SQSTM1-206ENST00000466342 A0A1B0GUL7 405 aa14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 LDHBP07195 334 aaKnown RBP14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 PRKAR2AP13861 404 aaKnown RBP14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 FOSL2P15408 326 aa14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 IRX6P78412 446 aaPredicted RBP14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 MAP3K10Q02779 954 aa14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 TREML2Q5T2D2 321 aa14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 ZFPM1Q8IX07 1006 aa14.56□□□□□ -0.08
SQSTM1-206ENST00000466342 ZGPATQ8N5A5 531 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms