RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 GCLCP48506 637 aaPredicted RBP16.61■□□□□ 0.25
CHD3-207ENST00000466233 FAM110CQ1W6H9 321 aa16.61■□□□□ 0.25
CHD3-207ENST00000466233 SH3D19Q5HYK7 790 aa16.61■□□□□ 0.25
CHD3-207ENST00000466233 NAA16Q6N069 864 aaPredicted RBP16.61■□□□□ 0.25
CHD3-207ENST00000466233 PI16Q6UXB8 463 aa16.61■□□□□ 0.25
CHD3-207ENST00000466233 TBC1D9Q6ZT07 1266 aa16.61■□□□□ 0.25
CHD3-207ENST00000466233 FOXP4Q8IVH2 680 aaPredicted RBP16.61■□□□□ 0.25
CHD3-207ENST00000466233 ZNF280CQ8ND82 737 aa16.61■□□□□ 0.25
CHD3-207ENST00000466233 USP17L5A8MUK1 530 aa16.6■□□□□ 0.25
CHD3-207ENST00000466233 SURF6O75683 361 aaKnown RBP16.6■□□□□ 0.25
CHD3-207ENST00000466233 TTC39AQ5SRH9 613 aa16.6■□□□□ 0.25
CHD3-207ENST00000466233 GADL1Q6ZQY3 521 aa16.6■□□□□ 0.25
CHD3-207ENST00000466233 FTSJ3Q8IY81 847 aaKnown RBP16.6■□□□□ 0.25
CHD3-207ENST00000466233 TEX11Q8IYF3 940 aa16.6■□□□□ 0.25
CHD3-207ENST00000466233 SMCR8Q8TEV9 937 aaPredicted RBP16.6■□□□□ 0.25
CHD3-207ENST00000466233 WDR18Q9BV38 432 aa16.6■□□□□ 0.25
CHD3-207ENST00000466233 AS3MTQ9HBK9 375 aa16.6■□□□□ 0.25
CHD3-207ENST00000466233 DOCK1Q14185 1865 aa16.59■□□□□ 0.25
CHD3-207ENST00000466233 TRIM75PA6NK02 468 aa16.59■□□□□ 0.25
CHD3-207ENST00000466233 ASNSP08243 561 aa16.59■□□□□ 0.25
CHD3-207ENST00000466233 HABP4Q5JVS0 413 aaKnown RBP16.59■□□□□ 0.25
CHD3-207ENST00000466233 TNNQ9UQP3 1299 aa16.59■□□□□ 0.25
CHD3-207ENST00000466233 BRCA2P51587 3418 aa16.59■□□□□ 0.25
CHD3-207ENST00000466233 CYP2E1P05181 493 aaPredicted RBP16.58■□□□□ 0.24
CHD3-207ENST00000466233 PRKCZQ05513 592 aa16.58■□□□□ 0.24
CHD3-207ENST00000466233 SPP2Q13103 211 aa16.58■□□□□ 0.24
CHD3-207ENST00000466233 OS9Q13438 667 aaPredicted RBP16.58■□□□□ 0.24
CHD3-207ENST00000466233 UBE2Q1Q7Z7E8 422 aa16.58■□□□□ 0.24
CHD3-207ENST00000466233 ERC1Q8IUD2 1116 aa16.58■□□□□ 0.24
CHD3-207ENST00000466233 C19orf81C9J6K1 198 aa16.57■□□□□ 0.24
CHD3-207ENST00000466233 TNPO2O14787 897 aaKnown RBP16.57■□□□□ 0.24
CHD3-207ENST00000466233 MS4A1P11836 297 aa16.57■□□□□ 0.24
CHD3-207ENST00000466233 MTFR1Q15390 333 aa16.57■□□□□ 0.24
CHD3-207ENST00000466233 SH3RF3Q8TEJ3 882 aaPredicted RBP16.57■□□□□ 0.24
CHD3-207ENST00000466233 COA7Q96BR5 231 aa16.57■□□□□ 0.24
CHD3-207ENST00000466233 DBNDD2Q9BQY9 259 aa16.57■□□□□ 0.24
CHD3-207ENST00000466233 ADCY3O60266 1144 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 CCL5P13501 91 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 HOXA7P31268 230 aaPredicted RBP16.56■□□□□ 0.24
CHD3-207ENST00000466233 FLT3LGP49771 235 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 HSP90AB4PQ58FF6 505 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 SHISA4Q96DD7 197 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 RNF208Q9H0X6 261 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 AATFQ9NY61 560 aaKnown RBP eCLIP16.56■□□□□ 0.24
CHD3-207ENST00000466233 PHIPQ8WWQ0 1821 aa16.56■□□□□ 0.24
CHD3-207ENST00000466233 PTPRFP10586 1907 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 FLT1P17948 1338 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 BACE1P56817 501 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 HNRNPUQ00839 825 aaKnown RBP eCLIP16.55■□□□□ 0.24
CHD3-207ENST00000466233 ITPRIPQ8IWB1 547 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 ANKRD13CQ8N6S4 541 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 GTF3C2Q8WUA4 911 aaPredicted RBP16.55■□□□□ 0.24
CHD3-207ENST00000466233 HTATIP2Q9BUP3 242 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 MORF4L1Q9UBU8 362 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 BIN2Q9UBW5 565 aaPredicted RBP16.55■□□□□ 0.24
CHD3-207ENST00000466233 DBNLQ9UJU6 430 aaKnown RBP16.55■□□□□ 0.24
CHD3-207ENST00000466233 TAOK2Q9UL54 1235 aa16.55■□□□□ 0.24
CHD3-207ENST00000466233 ZBED9Q6R2W3 1325 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 SGPL1O95470 568 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 HLA-DOAP06340 250 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 TREML2Q5T2D2 321 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 TGFBRAP1Q8WUH2 860 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 EAF2Q96CJ1 260 aaPredicted RBP16.54■□□□□ 0.24
CHD3-207ENST00000466233 EHD4Q9H223 541 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 GABRQQ9UN88 632 aa16.54■□□□□ 0.24
CHD3-207ENST00000466233 SLURP2P0DP57 97 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 ZAP70P43403 619 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 HMGCS2P54868 508 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 CEP85Q6P2H3 762 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 U2AF1L4Q8WU68 220 aaKnown RBP16.53■□□□□ 0.24
CHD3-207ENST00000466233 ASCC2Q9H1I8 757 aaPredicted RBP16.53■□□□□ 0.24
CHD3-207ENST00000466233 PAK6Q9NQU5 681 aaPredicted RBP16.53■□□□□ 0.24
CHD3-207ENST00000466233 SNRKQ9NRH2 765 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 TMOD4Q9NZQ9 345 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 ZSWIM8A7E2V4 1837 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 MAST2Q6P0Q8 1798 aa16.53■□□□□ 0.24
CHD3-207ENST00000466233 LOC285556D6RIA3 1793 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 FAM196BA6NMK8 535 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 USP17L10C9JJH3 530 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 RLBP1P12271 317 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 MAP3K12Q12852 859 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 RRP1BQ14684 758 aaKnown RBP16.52■□□□□ 0.24
CHD3-207ENST00000466233 TATDN1Q6P1N9 297 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 ADGRA1Q86SQ6 560 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 CRACR2BQ8N4Y2 399 aaPredicted RBP16.52■□□□□ 0.24
CHD3-207ENST00000466233 TRIM34Q9BYJ4 488 aa16.52■□□□□ 0.24
CHD3-207ENST00000466233 CHMP4BQ9H444 224 aaKnown RBP16.52■□□□□ 0.24
CHD3-207ENST00000466233 MGAMO43451 1857 aa16.52■□□□□ 0.23
CHD3-207ENST00000466233 MYCP01106 439 aaPredicted RBP16.51■□□□□ 0.23
CHD3-207ENST00000466233 INHAP05111 366 aa16.51■□□□□ 0.23
CHD3-207ENST00000466233 XRCC5P13010 732 aaKnown RBP16.51■□□□□ 0.23
CHD3-207ENST00000466233 TTF1Q15361 905 aaPredicted RBP16.51■□□□□ 0.23
CHD3-207ENST00000466233 ANKLE1Q8NAG6 615 aa16.51■□□□□ 0.23
CHD3-207ENST00000466233 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.51■□□□□ 0.23
CHD3-207ENST00000466233 CRISPLD2Q9H0B8 497 aa16.51■□□□□ 0.23
CHD3-207ENST00000466233 DNAJC18Q9H819 358 aa16.51■□□□□ 0.23
CHD3-207ENST00000466233 PIH1D3Q9NQM4 214 aaKnown RBP16.51■□□□□ 0.23
CHD3-207ENST00000466233 GJD2Q9UKL4 321 aa16.51■□□□□ 0.23
CHD3-207ENST00000466233 NR2E3Q9Y5X4 410 aa16.51■□□□□ 0.23
CHD3-207ENST00000466233 CYP7A1P22680 504 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms