RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 CCDC173Q0VFZ6 552 aa21.29■■□□□ 1
COL9A3-205ENST00000466192 CPLX2Q6PUV4 134 aaKnown RBP21.29■■□□□ 1
COL9A3-205ENST00000466192 SYNE3Q6ZMZ3 975 aa21.29■■□□□ 1
COL9A3-205ENST00000466192 TMTC2Q8N394 836 aa21.29■■□□□ 1
COL9A3-205ENST00000466192 CFAP45Q9UL16 551 aa21.29■■□□□ 1
COL9A3-205ENST00000466192 LETM1O95202 739 aaPredicted RBP21.28■■□□□ 1
COL9A3-205ENST00000466192 MFSD14BQ5SR56 506 aa21.28■■□□□ 1
COL9A3-205ENST00000466192 MPNDQ8N594 471 aa21.28■■□□□ 1
COL9A3-205ENST00000466192 AIFM3Q96NN9 605 aa21.28■■□□□ 1
COL9A3-205ENST00000466192 RTFDC1Q9BY42 306 aaPredicted RBP21.28■■□□□ 1
COL9A3-205ENST00000466192 MYH6P13533 1939 aa21.28■■□□□ 1
COL9A3-205ENST00000466192 BAG3O95817 575 aa21.27■■□□□ 1
COL9A3-205ENST00000466192 LDHCP07864 332 aa21.27■■□□□ 1
COL9A3-205ENST00000466192 USP17L8P0C7I0 530 aa21.27■■□□□ 1
COL9A3-205ENST00000466192 ENAHQ8N8S7 591 aaPredicted RBP21.27■■□□□ 1
COL9A3-205ENST00000466192 ZSCAN10Q96SZ4 725 aaPredicted RBP21.27■■□□□ 1
COL9A3-205ENST00000466192 MCM9Q9NXL9 1143 aa21.27■■□□□ 1
COL9A3-205ENST00000466192 ORC4O43929 436 aa21.27■■□□□ 1
COL9A3-205ENST00000466192 LIG1P18858 919 aa21.27■■□□□ 1
COL9A3-205ENST00000466192 FAM205AQ6ZU69 1335 aa21.27■□□□□ 0.99
COL9A3-205ENST00000466192 IARSP41252 1262 aaKnown RBP21.26■□□□□ 0.99
COL9A3-205ENST00000466192 USP5P45974 858 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 ZNF654Q8IZM8 581 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 TRIM44Q96DX7 344 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-205ENST00000466192 FTOQ9C0B1 505 aaKnown RBP eCLIP21.26■□□□□ 0.99
COL9A3-205ENST00000466192 SLX4Q8IY92 1834 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 SLC4A8Q2Y0W8 1093 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 TBC1D22AQ8WUA7 517 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 ZNF622Q969S3 477 aaKnown RBP eCLIP21.26■□□□□ 0.99
COL9A3-205ENST00000466192 PGBD1Q96JS3 809 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 PPP1R9BQ96SB3 815 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 ALG1Q9BT22 464 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 COA1Q9GZY4 146 aa21.26■□□□□ 0.99
COL9A3-205ENST00000466192 GTF2IP78347 998 aa21.25■□□□□ 0.99
COL9A3-205ENST00000466192 RTN1Q16799 776 aa21.25■□□□□ 0.99
COL9A3-205ENST00000466192 DPP8Q6V1X1 898 aaPredicted RBP21.25■□□□□ 0.99
COL9A3-205ENST00000466192 USP28Q96RU2 1077 aa21.25■□□□□ 0.99
COL9A3-205ENST00000466192 NOL10Q9BSC4 688 aaKnown RBP21.25■□□□□ 0.99
COL9A3-205ENST00000466192 UBE2Q2LH0YL09 131 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 IFNAR1P17181 557 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 BTDP43251 543 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 RCAN1P53805 252 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 C12orf60Q5U649 245 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 C2CD5Q86YS7 1000 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 ZC3H12CQ9C0D7 883 aaKnown RBP21.24■□□□□ 0.99
COL9A3-205ENST00000466192 GPR75-ASB3A0A0A6YYF3 556 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 SLC3A2P08195 630 aaKnown RBP21.24■□□□□ 0.99
COL9A3-205ENST00000466192 IQCA1Q86XH1 822 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 FANCBQ8NB91 859 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 TGFBRAP1Q8WUH2 860 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 NUP133Q8WUM0 1156 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 STK32BQ9NY57 414 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 STK36Q9NRP7 1315 aa21.24■□□□□ 0.99
COL9A3-205ENST00000466192 GOLGB1Q14789 3259 aaKnown RBP21.24■□□□□ 0.99
COL9A3-205ENST00000466192 FOCADQ5VW36 1801 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 MYH1P12882 1939 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 ATL3Q6DD88 541 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 RGS22Q8NE09 1264 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 BICD2Q8TD16 824 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 ZNF396Q96N95 335 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-205ENST00000466192 SLC26A6Q9BXS9 759 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 DACT1Q9NYF0 836 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 DDX60LQ5H9U9 1706 aaKnown RBP21.23■□□□□ 0.99
COL9A3-205ENST00000466192 KIF28PB7ZC32 967 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 FMNL1O95466 1100 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-205ENST00000466192 PDE4BQ07343 736 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 SSRP1Q08945 709 aaKnown RBP21.23■□□□□ 0.99
COL9A3-205ENST00000466192 FAM47AQ5JRC9 791 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 IFIT1BQ5T764 474 aaKnown RBP21.23■□□□□ 0.99
COL9A3-205ENST00000466192 FAM163AQ96GL9 167 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-205ENST00000466192 RCOR1Q9UKL0 485 aa21.23■□□□□ 0.99
COL9A3-205ENST00000466192 KIF23Q02241 960 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-205ENST00000466192 CAMK4Q16566 473 aa21.22■□□□□ 0.99
COL9A3-205ENST00000466192 GAKO14976 1311 aa21.22■□□□□ 0.99
COL9A3-205ENST00000466192 H0YIN7 160 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 NMT2O60551 498 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 POLR3DP05423 398 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-205ENST00000466192 DOK7Q18PE1 504 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 KRT40Q6A162 431 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 NBPF11Q86T75 865 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 MAPKAPK5Q8IW41 473 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 CMTR1Q8N1G2 835 aaKnown RBP21.21■□□□□ 0.99
COL9A3-205ENST00000466192 NUP62CLQ9H1M0 184 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 TAOK2Q9UL54 1235 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 CERS3Q8IU89 383 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 DYNLL2Q96FJ2 89 aa21.21■□□□□ 0.99
COL9A3-205ENST00000466192 TMX4Q9H1E5 349 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-205ENST00000466192 RRAGDQ9NQL2 400 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-205ENST00000466192 ROBO3Q96MS0 1386 aa21.2■□□□□ 0.99
COL9A3-205ENST00000466192 CCDC196A0A1B0GTZ2 297 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 GUCY1A2P33402 732 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 STYK1Q6J9G0 422 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 BRAPQ7Z569 592 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 CCDC82Q8N4S0 544 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 FUCA2Q9BTY2 467 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 NR1I2O75469 434 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 CHRNA5P30532 468 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 RHBDL3P58872 404 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 SLF2Q8IX21 1173 aa21.2■□□□□ 0.98
COL9A3-205ENST00000466192 CRACR2BQ8N4Y2 399 aaPredicted RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms