RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 FSD1Q9BTV5 496 aa14.29□□□□□ -0.12
VPS52-213ENST00000461743 ELP3Q9H9T3 547 aa14.29□□□□□ -0.12
VPS52-213ENST00000461743 ATP8A2Q9NTI2 1148 aa14.29□□□□□ -0.12
VPS52-213ENST00000461743 PHF20L1A8MW92 1017 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 CTNND1O60716 968 aaKnown RBP14.28□□□□□ -0.12
VPS52-213ENST00000461743 MBD4O95243 580 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 NEFLP07196 543 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 PPATQ06203 517 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 PPIL2Q13356 520 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 SCYL3Q8IZE3 742 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 LCORLQ8N3X6 602 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 OPTNQ96CV9 577 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 TBC1D2Q9BYX2 928 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.28□□□□□ -0.12
VPS52-213ENST00000461743 GINM1Q9NU53 330 aa14.28□□□□□ -0.12
VPS52-213ENST00000461743 CASP8AP2Q9UKL3 1982 aa14.27□□□□□ -0.12
VPS52-213ENST00000461743 GNAT2P19087 354 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 INPP5BP32019 993 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 TM4SF4P48230 202 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 CTCFP49711 727 aaPredicted RBP14.27□□□□□ -0.13
VPS52-213ENST00000461743 TTC6Q86TZ1 520 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 FOXP4Q8IVH2 680 aaPredicted RBP14.27□□□□□ -0.13
VPS52-213ENST00000461743 PLEKHM2Q8IWE5 1019 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 DDRGK1Q96HY6 314 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 TRIM34Q9BYJ4 488 aa14.27□□□□□ -0.13
VPS52-213ENST00000461743 TESPA1A2RU30 521 aaPredicted RBP14.26□□□□□ -0.13
VPS52-213ENST00000461743 ALDH1A1P00352 501 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 GTF2A2P52657 109 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 GIMAP6Q6P9H5 292 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 AMOTL1Q8IY63 956 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 CRACR2BQ8N4Y2 399 aaPredicted RBP14.26□□□□□ -0.13
VPS52-213ENST00000461743 ZKSCAN4Q969J2 545 aaPredicted RBP14.26□□□□□ -0.13
VPS52-213ENST00000461743 ZIC5Q96T25 663 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 CFHR5Q9BXR6 569 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 PUS7LQ9H0K6 701 aaKnown RBP14.26□□□□□ -0.13
VPS52-213ENST00000461743 ARMT1Q9H993 441 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 DCP1AQ9NPI6 582 aaPredicted RBP14.26□□□□□ -0.13
VPS52-213ENST00000461743 PICK1Q9NRD5 415 aa14.26□□□□□ -0.13
VPS52-213ENST00000461743 MYH4Q9Y623 1939 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 FOXN1O15353 648 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 GJA5P36382 358 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 ZMYM1Q5SVZ6 1142 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 CENPQQ7L2Z9 268 aaPredicted RBP14.25□□□□□ -0.13
VPS52-213ENST00000461743 OTUD5Q96G74 571 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 ZCCHC17Q9NP64 241 aaKnown RBP14.25□□□□□ -0.13
VPS52-213ENST00000461743 SERPINB13Q9UIV8 391 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 PALD1Q9ULE6 856 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 KCNH4Q9UQ05 1017 aa14.25□□□□□ -0.13
VPS52-213ENST00000461743 ROBO3Q96MS0 1386 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 GPAA1O43292 621 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 SNAPC2Q13487 334 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 OTUD7BQ6GQQ9 843 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 SDR42E1Q8WUS8 393 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 OSBP2Q969R2 916 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 STRBPQ96SI9 672 aaKnown RBP14.24□□□□□ -0.13
VPS52-213ENST00000461743 DNAJC18Q9H819 358 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 PRDM10Q9NQV6 1147 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 MCM9Q9NXL9 1143 aa14.24□□□□□ -0.13
VPS52-213ENST00000461743 ARPP21Q9UBL0 812 aaPredicted RBP14.24□□□□□ -0.13
VPS52-213ENST00000461743 SAP30BPQ9UHR5 308 aaKnown RBP14.24□□□□□ -0.13
VPS52-213ENST00000461743 MGAMO43451 1857 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 HIP1O00291 1037 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 POLR3DP05423 398 aaPredicted RBP14.23□□□□□ -0.13
VPS52-213ENST00000461743 ASNSP08243 561 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 HSPA8P11142 646 aaKnown RBP14.23□□□□□ -0.13
VPS52-213ENST00000461743 CETPP11597 493 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 PTPRAP18433 802 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 CAP2P40123 477 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 MKRN3Q13064 507 aaKnown RBP14.23□□□□□ -0.13
VPS52-213ENST00000461743 NOM1Q5C9Z4 860 aaKnown RBP14.23□□□□□ -0.13
VPS52-213ENST00000461743 ERICH6BQ5W0A0 696 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 TATDN1Q6P1N9 297 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 MS4A4AQ96JQ5 239 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 HELLSQ9NRZ9 838 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 SWAP70Q9UH65 585 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 SLC4A4Q9Y6R1 1079 aa14.23□□□□□ -0.13
VPS52-213ENST00000461743 FAM196BA6NMK8 535 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 TRIM6-TRIM34B2RNG4 842 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 CXCL11O14625 94 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 IRF6O14896 467 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 CHGBP05060 677 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 GABPAQ06546 454 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 SLFNL1Q499Z3 407 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 IFNL1Q8IU54 200 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 CNKSR2Q8WXI2 1034 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 RNF186Q9NXI6 227 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 PARP14Q460N5 1801 aa14.22□□□□□ -0.13
VPS52-213ENST00000461743 ZMYM6O95789 1325 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 CCL15-CCL14A0A0B4J2E2 113 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 M0R2C6 588 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 PDE4AP27815 886 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 CCL15Q16663 113 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 SBK1Q52WX2 424 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 TTC22Q5TAA0 569 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 NACAP1Q9BZK3 213 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 AS3MTQ9HBK9 375 aa14.21□□□□□ -0.13
VPS52-213ENST00000461743 A0A0G2JLL6 359 aaPredicted RBP14.2□□□□□ -0.14
VPS52-213ENST00000461743 USP17L5A8MUK1 530 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 GSG1L2A8MUP6 293 aa14.2□□□□□ -0.14
VPS52-213ENST00000461743 IGF2BP3O00425 579 aaKnown RBP eCLIP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms