RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 DDX11Q96FC9 970 aa16.71■□□□□ 0.27
USP39-207ENST00000450066 ZKSCAN3Q9BRR0 538 aa16.71■□□□□ 0.27
USP39-207ENST00000450066 ATP6V1DQ9Y5K8 247 aa16.71■□□□□ 0.27
USP39-207ENST00000450066 SLC12A7Q9Y666 1083 aa16.71■□□□□ 0.27
USP39-207ENST00000450066 NAV1Q8NEY1 1877 aa16.7■□□□□ 0.26
USP39-207ENST00000450066 FLT1P17948 1338 aa16.7■□□□□ 0.26
USP39-207ENST00000450066 VPS37CA5D8V6 355 aaPredicted RBP16.7■□□□□ 0.26
USP39-207ENST00000450066 METAP2P50579 478 aaKnown RBP eCLIP16.7■□□□□ 0.262e-7■■■□□ 16.1
USP39-207ENST00000450066 HDLBPQ00341 1268 aaKnown RBP16.7■□□□□ 0.26
USP39-207ENST00000450066 IQCA1Q86XH1 822 aa16.7■□□□□ 0.26
USP39-207ENST00000450066 ZSCAN10Q96SZ4 725 aaPredicted RBP16.7■□□□□ 0.26
USP39-207ENST00000450066 CDK5RAP2Q96SN8 1893 aa16.7■□□□□ 0.26
USP39-207ENST00000450066 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
USP39-207ENST00000450066 SCNN1DP51172 638 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 RCAN1P53805 252 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 SEC23AQ15436 765 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 DALRD3Q5D0E6 543 aaKnown RBP16.69■□□□□ 0.26
USP39-207ENST00000450066 SYNE3Q6ZMZ3 975 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 CD2APQ9Y5K6 639 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 TNKSO95271 1327 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 CPLX1O14810 134 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 POLR3DP05423 398 aaPredicted RBP16.69■□□□□ 0.26
USP39-207ENST00000450066 NID2Q14112 1375 aa16.69■□□□□ 0.26
USP39-207ENST00000450066 DDX60LQ5H9U9 1706 aaKnown RBP16.69■□□□□ 0.26
USP39-207ENST00000450066 YDJCA8MPS7 323 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 TRAK2O60296 914 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 CRKP46108 304 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 MICU3Q86XE3 530 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 ENAHQ8N8S7 591 aaPredicted RBP16.68■□□□□ 0.26
USP39-207ENST00000450066 ZDHHC15Q96MV8 337 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 SAP30BPQ9UHR5 308 aaKnown RBP16.68■□□□□ 0.26
USP39-207ENST00000450066 FOCADQ5VW36 1801 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 CDKL5O76039 1030 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 PLCD1P51178 756 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 SKOR2Q2VWA4 1001 aaPredicted RBP16.68■□□□□ 0.26
USP39-207ENST00000450066 APOBEC3HQ6NTF7 200 aaKnown RBP16.68■□□□□ 0.26
USP39-207ENST00000450066 RAB11FIP4Q86YS3 637 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 KIAA0825Q8IV33 1275 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 ZNF287Q9HBT7 754 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 ZNF277Q9NRM2 450 aaPredicted RBP16.68■□□□□ 0.26
USP39-207ENST00000450066 USP40Q9NVE5 1235 aa16.68■□□□□ 0.26
USP39-207ENST00000450066 FDPSP14324 419 aaKnown RBP16.67■□□□□ 0.26
USP39-207ENST00000450066 SLC4A8Q2Y0W8 1093 aa16.67■□□□□ 0.26
USP39-207ENST00000450066 CPLX2Q6PUV4 134 aaKnown RBP16.67■□□□□ 0.26
USP39-207ENST00000450066 CDC37L1Q7L3B6 337 aa16.67■□□□□ 0.26
USP39-207ENST00000450066 LARGE2Q8N3Y3 721 aa16.67■□□□□ 0.26
USP39-207ENST00000450066 SERPINA10Q9UK55 444 aa16.67■□□□□ 0.26
USP39-207ENST00000450066 PSDA5PKW4 1024 aaPredicted RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 GOLGA8AA7E2F4 631 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 WDHD1O75717 1129 aaPredicted RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 ADD1P35611 737 aaKnown RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 CDC42EP5Q6NZY7 148 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 DYNLL2Q96FJ2 89 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 CHAMP1Q96JM3 812 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 MKNK2Q9HBH9 465 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 PPP1R1BQ9UD71 204 aaPredicted RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 BRCA1P38398 1863 aaKnown RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 TSPY2A6NKD2 308 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 H3BQV1 296 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 RXRAP19793 462 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 CDC27P30260 824 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 PTGER2P43116 358 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 IFIT1BQ5T764 474 aaKnown RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 IFFO2Q5TF58 517 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 ZNF654Q8IZM8 581 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 MYL10Q9BUA6 226 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 FAM217BQ9NTX9 383 aaPredicted RBP16.66■□□□□ 0.26
USP39-207ENST00000450066 LMBRD1Q9NUN5 540 aa16.66■□□□□ 0.26
USP39-207ENST00000450066 PPP2R5BQ15173 497 aa16.65■□□□□ 0.26
USP39-207ENST00000450066 FAM47AQ5JRC9 791 aa16.65■□□□□ 0.26
USP39-207ENST00000450066 C16orf86Q6ZW13 317 aa16.65■□□□□ 0.26
USP39-207ENST00000450066 MYO3BQ8WXR4 1341 aa16.65■□□□□ 0.26
USP39-207ENST00000450066 PSME4Q14997 1843 aa16.65■□□□□ 0.26
USP39-207ENST00000450066 NTRK3Q16288 839 aa16.65■□□□□ 0.26
USP39-207ENST00000450066 ORC3Q9UBD5 711 aaPredicted RBP16.65■□□□□ 0.26
USP39-207ENST00000450066 MYH1P12882 1939 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 ADAMTSL1Q8N6G6 1762 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 CCDC196A0A1B0GTZ2 297 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 PRPF40AO75400 957 aaKnown RBP16.64■□□□□ 0.25
USP39-207ENST00000450066 TFAP4Q01664 338 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 PICALMQ13492 652 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 FOXD4L6Q3SYB3 417 aaPredicted RBP16.64■□□□□ 0.25
USP39-207ENST00000450066 FOXD4L3Q6VB84 417 aaPredicted RBP16.64■□□□□ 0.25
USP39-207ENST00000450066 TTC6Q86TZ1 520 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 CCDC144CPQ8IYA2 1237 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 FANCBQ8NB91 859 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 RGS22Q8NE09 1264 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 DDX4Q9NQI0 724 aaKnown RBP16.64■□□□□ 0.25
USP39-207ENST00000450066 COL4A5P29400 1685 aa16.64■□□□□ 0.25
USP39-207ENST00000450066 PPFIA3O75145 1194 aa16.63■□□□□ 0.25
USP39-207ENST00000450066 VIL1P09327 827 aaKnown RBP16.63■□□□□ 0.25
USP39-207ENST00000450066 IARSP41252 1262 aaKnown RBP16.63■□□□□ 0.25
USP39-207ENST00000450066 RTN1Q16799 776 aa16.63■□□□□ 0.25
USP39-207ENST00000450066 CCDC178Q5BJE1 867 aa16.63■□□□□ 0.25
USP39-207ENST00000450066 RSBN1LQ6PCB5 846 aaPredicted RBP16.63■□□□□ 0.25
USP39-207ENST00000450066 CATIPQ7Z7H3 387 aa16.63■□□□□ 0.25
USP39-207ENST00000450066 ZNF444Q8N0Y2 327 aaPredicted RBP16.63■□□□□ 0.25
USP39-207ENST00000450066 ZSCAN16Q9H4T2 348 aaPredicted RBP16.63■□□□□ 0.25
USP39-207ENST00000450066 TCP11L1Q9NUJ3 509 aa16.63■□□□□ 0.25
USP39-207ENST00000450066 ZNRF3Q9ULT6 936 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms