RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 TAOK2Q9UL54 1235 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.66■□□□□ 0.26
SHMT2-203ENST00000449049 NEDD4P46934 1319 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 PSMA5P28066 241 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 RASA3Q14644 834 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 MFSD6Q6ZSS7 791 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 C16orf86Q6ZW13 317 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 JAKMIP1Q96N16 626 aaKnown RBP16.66■□□□□ 0.26
SHMT2-203ENST00000449049 TMEM39BQ9GZU3 492 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 PI4KBQ9UBF8 816 aa16.66■□□□□ 0.26
SHMT2-203ENST00000449049 METTL16Q86W50 562 aaKnown RBP16.65■□□□□ 0.26
SHMT2-203ENST00000449049 ZSCAN29Q8IWY8 852 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-203ENST00000449049 DYNLL2Q96FJ2 89 aa16.65■□□□□ 0.26
SHMT2-203ENST00000449049 TEPSINQ96N21 525 aa16.65■□□□□ 0.26
SHMT2-203ENST00000449049 NEK1Q96PY6 1258 aa16.65■□□□□ 0.26
SHMT2-203ENST00000449049 CNNM2Q9H8M5 875 aa16.65■□□□□ 0.26
SHMT2-203ENST00000449049 ZSWIM6Q9HCJ5 1215 aa16.65■□□□□ 0.26
SHMT2-203ENST00000449049 PPP2R3BQ9Y5P8 575 aa16.65■□□□□ 0.26
SHMT2-203ENST00000449049 VEGFAP15692 232 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-203ENST00000449049 RABEP1Q15276 862 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 NCOA7Q8NI08 942 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 DEFB129Q9H1M3 183 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 INCENPQ9NQS7 918 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 SERPINB13Q9UIV8 391 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 ORC4O43929 436 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 PDE4BQ07343 736 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 MB21D2Q8IYB1 491 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-203ENST00000449049 CSRNP1Q96S65 589 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 KRT23Q9C075 422 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 RRAGCQ9HB90 399 aa16.64■□□□□ 0.25
SHMT2-203ENST00000449049 SCAF8Q9UPN6 1271 aaKnown RBP16.64■□□□□ 0.25
SHMT2-203ENST00000449049 HMGB1P09429 215 aaKnown RBP16.63■□□□□ 0.25
SHMT2-203ENST00000449049 CASTP20810 708 aaKnown RBP16.63■□□□□ 0.25
SHMT2-203ENST00000449049 NT5C2P49902 561 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 TRDNQ13061 729 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 COL9A3Q14050 684 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-203ENST00000449049 FOXP4Q8IVH2 680 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-203ENST00000449049 STK11IPQ8N1F8 1099 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 DCPSQ96C86 337 aaKnown RBP16.63■□□□□ 0.25
SHMT2-203ENST00000449049 SWAP70Q9UH65 585 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 CDK8P49336 464 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 BLOC1S2Q6QNY1 142 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 RUFY3Q7L099 469 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 RALYLQ86SE5 291 aaKnown RBP16.63■□□□□ 0.25
SHMT2-203ENST00000449049 CDAN1Q8IWY9 1227 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 IL27Q8NEV9 243 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 DNAJC18Q9H819 358 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 ZNF287Q9HBT7 754 aa16.63■□□□□ 0.25
SHMT2-203ENST00000449049 EAPPQ56P03 285 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-203ENST00000449049 SLC44A5Q8NCS7 719 aa16.62■□□□□ 0.25
SHMT2-203ENST00000449049 NKX2-3Q8TAU0 364 aa16.62■□□□□ 0.25
SHMT2-203ENST00000449049 UPF3BQ9BZI7 483 aaKnown RBP16.62■□□□□ 0.25
SHMT2-203ENST00000449049 CYP46A1Q9Y6A2 500 aa16.62■□□□□ 0.25
SHMT2-203ENST00000449049 B4E1Z4 1266 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 PRDM1O75626 825 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 RPS6KB1P23443 525 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 NMRK2Q9NPI5 230 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 HERC5Q9UII4 1024 aaKnown RBP16.61■□□□□ 0.25
SHMT2-203ENST00000449049 MYH8P13535 1937 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 TBC1D12O60347 775 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 CPA1P15085 419 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 SHMT1P34896 483 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 MAP3K10Q02779 954 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 RRP12Q5JTH9 1297 aaKnown RBP16.61■□□□□ 0.25
SHMT2-203ENST00000449049 DHX32Q7L7V1 743 aaKnown RBP16.61■□□□□ 0.25
SHMT2-203ENST00000449049 CRACR2BQ8N4Y2 399 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-203ENST00000449049 ESR2Q92731 530 aa16.61■□□□□ 0.25
SHMT2-203ENST00000449049 WDR19Q8NEZ3 1342 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 KDM4AO75164 1064 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 RASA1P20936 1047 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 EXOSC10Q01780 885 aaKnown RBP16.6■□□□□ 0.25
SHMT2-203ENST00000449049 SULF1Q8IWU6 871 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 TTC14Q96N46 770 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 MKNK2Q9HBH9 465 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 TOMM22Q9NS69 142 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 POLR2AP24928 1970 aaKnown RBP16.6■□□□□ 0.25
SHMT2-203ENST00000449049 SLURP2P0DP57 97 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 MCM5P33992 734 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 NEK4P51957 841 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 ANTXR2P58335 489 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 TATDN1Q6P1N9 297 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 CYB5R4Q7L1T6 521 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 TRIM34Q9BYJ4 488 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 ZSWIM5Q9P217 1185 aa16.6■□□□□ 0.25
SHMT2-203ENST00000449049 ADM5C9JUS6 153 aa16.59■□□□□ 0.25
SHMT2-203ENST00000449049 POTEIP0CG38 1075 aa16.59■□□□□ 0.25
SHMT2-203ENST00000449049 POTEJP0CG39 1038 aa16.59■□□□□ 0.25
SHMT2-203ENST00000449049 KRT26Q7Z3Y9 468 aa16.59■□□□□ 0.25
SHMT2-203ENST00000449049 ZNF526Q8TF50 670 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-203ENST00000449049 ALDH8A1Q9H2A2 487 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-203ENST00000449049 SSC5DA1L4H1 1573 aa16.59■□□□□ 0.25
SHMT2-203ENST00000449049 FAM196BA6NMK8 535 aa16.58■□□□□ 0.25
SHMT2-203ENST00000449049 NBPF12Q5TAG4 269 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-203ENST00000449049 ZNF444Q8N0Y2 327 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-203ENST00000449049 HOOK2Q96ED9 719 aa16.58■□□□□ 0.25
SHMT2-203ENST00000449049 MTA3Q9BTC8 594 aa16.58■□□□□ 0.25
SHMT2-203ENST00000449049 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.58■□□□□ 0.25
SHMT2-203ENST00000449049 GREB1LQ9C091 1923 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-203ENST00000449049 PLIN4Q96Q06 1357 aa16.58■□□□□ 0.24
SHMT2-203ENST00000449049 PRC1O43663 620 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms