RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 LDHBP07195 334 aaKnown RBP16.39■□□□□ 0.21
LIMD1-202ENST00000440097 PTGS1P23219 599 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 ME1P48163 572 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 SPTY2D1Q68D10 685 aaPredicted RBP16.39■□□□□ 0.21
LIMD1-202ENST00000440097 SGMS1Q86VZ5 419 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 PGBD1Q96JS3 809 aa16.39■□□□□ 0.21
LIMD1-202ENST00000440097 RXRBP28702 533 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 GPSM2P81274 684 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 TRIM29Q14134 588 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 PROM2Q8N271 834 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 SLC26A6Q9BXS9 759 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 DDR1Q08345 913 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 NCBP1Q09161 790 aaKnown RBP16.38■□□□□ 0.21
LIMD1-202ENST00000440097 TNMDQ9H2S6 317 aa16.38■□□□□ 0.21
LIMD1-202ENST00000440097 RBM6P78332 1123 aaKnown RBP16.38■□□□□ 0.21
LIMD1-202ENST00000440097 SF3A1Q15459 793 aaKnown RBP16.38■□□□□ 0.21
LIMD1-202ENST00000440097 C6orf229H3BNL8 230 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 CCDC192P0DO97 292 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 CKAP2LQ8IYA6 745 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 WDR66Q8TBY9 1149 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 FEZ1Q99689 392 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 BRIP1Q9BX63 1249 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 GGA1Q9UJY5 639 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 BRWD3Q6RI45 1802 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 TNKSO95271 1327 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 CHD4Q14839 1912 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 MYH13Q9UKX3 1938 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 NR1I2O75469 434 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 RTN1Q16799 776 aa16.37■□□□□ 0.21
LIMD1-202ENST00000440097 ILDR1Q86SU0 546 aaPredicted RBP16.37■□□□□ 0.21
LIMD1-202ENST00000440097 CMTR1Q8N1G2 835 aaKnown RBP16.37■□□□□ 0.21
LIMD1-202ENST00000440097 CACNA1SQ13698 1873 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 UBR3Q6ZT12 1888 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.36■□□□□ 0.21
LIMD1-202ENST00000440097 SSRP1Q08945 709 aaKnown RBP16.36■□□□□ 0.21
LIMD1-202ENST00000440097 MAP3K11Q16584 847 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 CTR9Q6PD62 1173 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 TMTC2Q8N394 836 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 PDS5AQ29RF7 1337 aaKnown RBP16.36■□□□□ 0.21
LIMD1-202ENST00000440097 POLRMTO00411 1230 aaKnown RBP16.36■□□□□ 0.21
LIMD1-202ENST00000440097 USP5P45974 858 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 DIXDC1Q155Q3 683 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 CRY2Q49AN0 593 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 ZNF772Q68DY9 489 aaPredicted RBP16.36■□□□□ 0.21
LIMD1-202ENST00000440097 IQCA1Q86XH1 822 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 TRIM22Q8IYM9 498 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 NOL10Q9BSC4 688 aaKnown RBP16.36■□□□□ 0.21
LIMD1-202ENST00000440097 MCM9Q9NXL9 1143 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 OGFRQ9NZT2 677 aa16.36■□□□□ 0.21
LIMD1-202ENST00000440097 STK38Q15208 465 aa16.35■□□□□ 0.21
LIMD1-202ENST00000440097 DCP1AQ9NPI6 582 aaPredicted RBP16.35■□□□□ 0.21
LIMD1-202ENST00000440097 BAZ2AQ9UIF9 1905 aaKnown RBP16.35■□□□□ 0.21
LIMD1-202ENST00000440097 ZNF654Q8IZM8 581 aa16.35■□□□□ 0.21
LIMD1-202ENST00000440097 C16orf45Q96MC5 204 aaPredicted RBP16.35■□□□□ 0.21
LIMD1-202ENST00000440097 DDX19AQ9NUU7 478 aaKnown RBP16.35■□□□□ 0.21
LIMD1-202ENST00000440097 ANAPC4Q9UJX5 808 aa16.35■□□□□ 0.21
LIMD1-202ENST00000440097 UBE2Q2LH0YL09 131 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 BBOX1O75936 387 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 SLC3A2P08195 630 aaKnown RBP16.34■□□□□ 0.21
LIMD1-202ENST00000440097 EVX2Q03828 476 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 LRMPQ12912 555 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 IFIT1BQ5T764 474 aaKnown RBP16.34■□□□□ 0.21
LIMD1-202ENST00000440097 MSL1Q68DK7 614 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 ATL3Q6DD88 541 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 CCDC73Q6ZRK6 1079 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 ZNF771Q7L3S4 317 aaPredicted RBP16.34■□□□□ 0.21
LIMD1-202ENST00000440097 CCAR1Q8IX12 1150 aaKnown RBP16.34■□□□□ 0.21
LIMD1-202ENST00000440097 KLHL34Q8N239 644 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 TDRD7Q8NHU6 1098 aaKnown RBP16.34■□□□□ 0.21
LIMD1-202ENST00000440097 FAM200AQ8TCP9 573 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 RCOR1Q9UKL0 485 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 ZNF827Q17R98 1081 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 KRT40Q6A162 431 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 CCDC186Q7Z3E2 898 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 BRAPQ7Z569 592 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 FBXW7Q969H0 707 aa16.34■□□□□ 0.21
LIMD1-202ENST00000440097 FAM217BQ9NTX9 383 aaPredicted RBP16.34■□□□□ 0.21
LIMD1-202ENST00000440097 CCDC196A0A1B0GTZ2 297 aa16.33■□□□□ 0.21
LIMD1-202ENST00000440097 KIF28PB7ZC32 967 aa16.33■□□□□ 0.21
LIMD1-202ENST00000440097 CYP2D6P10635 497 aa16.33■□□□□ 0.21
LIMD1-202ENST00000440097 ATP2B4P23634 1241 aa16.33■□□□□ 0.21
LIMD1-202ENST00000440097 LUZP1Q86V48 1076 aa16.33■□□□□ 0.21
LIMD1-202ENST00000440097 ZSCAN10Q96SZ4 725 aaPredicted RBP16.33■□□□□ 0.21
LIMD1-202ENST00000440097 ATP8A2Q9NTI2 1148 aa16.33■□□□□ 0.21
LIMD1-202ENST00000440097 KIF23Q02241 960 aaPredicted RBP16.33■□□□□ 0.2
LIMD1-202ENST00000440097 NTRK3Q16288 839 aa16.33■□□□□ 0.2
LIMD1-202ENST00000440097 MYSM1Q5VVJ2 828 aa16.33■□□□□ 0.2
LIMD1-202ENST00000440097 CD209Q9NNX6 404 aa16.33■□□□□ 0.2
LIMD1-202ENST00000440097 CLIC4Q9Y696 253 aa16.33■□□□□ 0.2
LIMD1-202ENST00000440097 SMTNL1A8MU46 457 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 RIMBP2O15034 1052 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 BAG3O95817 575 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 NAA30Q147X3 362 aaPredicted RBP16.32■□□□□ 0.2
LIMD1-202ENST00000440097 FAM47AQ5JRC9 791 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 ENAHQ8N8S7 591 aaPredicted RBP16.32■□□□□ 0.2
LIMD1-202ENST00000440097 FANCBQ8NB91 859 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 MRVI1Q9Y6F6 885 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 IRS2Q9Y4H2 1338 aa16.32■□□□□ 0.2
LIMD1-202ENST00000440097 HMGB2P26583 209 aaKnown RBP16.32■□□□□ 0.2
LIMD1-202ENST00000440097 GSTO1P78417 241 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms