RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 TEKT1Q969V4 418 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 JADE2Q9NQC1 790 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 PIH1D3Q9NQM4 214 aaKnown RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 CEP83Q9Y592 693 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 SSH2Q76I76 1423 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 CCP110O43303 1012 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 EPB41L2O43491 1005 aaKnown RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 MYCNP04198 464 aaPredicted RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 IBSPP21815 317 aaPredicted RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 ZFYVE27Q5T4F4 411 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 SMARCC2Q8TAQ2 1214 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 CALCOCO1Q9P1Z2 691 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 ATF5Q9Y2D1 282 aaPredicted RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 CEMIPQ8WUJ3 1361 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 NEURL4Q96JN8 1562 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 DEXIO95424 95 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 XRCC6P12956 609 aaKnown RBP eCLIP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 BTDP43251 543 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 DIXDC1Q155Q3 683 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 VPS72Q15906 364 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 NOM1Q5C9Z4 860 aaKnown RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 KRT40Q6A162 431 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 BRAPQ7Z569 592 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 ZNF654Q8IZM8 581 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 MORC4Q8TE76 937 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 GTF3C6Q969F1 213 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 LLPHQ9BRT6 129 aaKnown RBP9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 CLIP2Q9UDT6 1046 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 PPEF1O14829 653 aaPredicted RBP9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 GADD45BO75293 160 aaPredicted RBP9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 SFPQP23246 707 aaKnown RBP eCLIP9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 ADD2P35612 726 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 FOXO4P98177 505 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 PDIA6Q15084 440 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 DLGAP5Q15398 846 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 NIM1KQ8IY84 436 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 CNKSR1Q969H4 720 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 LEMD3Q9Y2U8 911 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 OVOS2A0A0G2JMS6 1433 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 BBOX1O75936 387 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 GRM1Q13255 1194 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 PLS1Q14651 629 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 TXNRD1Q16881 649 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 LETM2Q2VYF4 491 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 SPECC1Q5M775 1068 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 SDR16C5Q8N3Y7 309 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 UIMC1Q96RL1 719 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 CYP2D7A0A087X1C5 515 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 STAT6P42226 847 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 MATR3P43243 847 aaKnown RBP eCLIP9.23□□□□□ -0.932e-8■■■□□ 15.9
TMEM39A-202ENST00000438581 RBM6P78332 1123 aaKnown RBP9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 MTA1Q13330 715 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 ENOX2Q16206 610 aaKnown RBP9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 LCORLQ8N3X6 602 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 VPS54Q9P1Q0 977 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 TNKSO95271 1327 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 ITSN1Q15811 1721 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 IQSEC2Q5JU85 1478 aa9.23□□□□□ -0.93
TMEM39A-202ENST00000438581 VWA3AA6NCI4 1184 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 GNA11P29992 359 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 ITPK1Q13572 414 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 PIK3AP1Q6ZUJ8 805 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 ARMCX6Q7L4S7 300 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 SH3BP1Q9Y3L3 701 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 ARHGAP23Q9P227 1491 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 SPDYE3A6NKU9 549 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 ZNF500O60304 480 aaPredicted RBP9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 BMP15O95972 392 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 TOP1P11387 765 aaKnown RBP9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 TRIM28Q13263 835 aaKnown RBP9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 CCDC70Q6NSX1 233 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 ZSCAN30Q86W11 494 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 FCHSD1Q86WN1 690 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 MINPP1Q9UNW1 487 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 BRD1O95696 1058 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 SLC1A4P43007 532 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 JAKMIP3Q5VZ66 844 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 SUPT20HQ8NEM7 779 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 EHMT1Q9H9B1 1298 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 SLIT1O75093 1534 aa9.22□□□□□ -0.93
TMEM39A-202ENST00000438581 TYRO3Q06418 890 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 GRAPQ13588 217 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 ANO1Q5XXA6 986 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 KANK3Q6NY19 840 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 GRAPLQ8TC17 118 aaPredicted RBP9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 ARPP21Q9UBL0 812 aaPredicted RBP9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 CYP2E1P05181 493 aaPredicted RBP9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 LMOD1P29536 600 aaPredicted RBP9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 PEX19P40855 299 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 AMPD3Q01432 767 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 SCARF1Q14162 830 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 NFIXQ14938 502 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 CDC37Q16543 378 aaPredicted RBP9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 TMC6Q7Z403 805 aa9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 GPHNQ9NQX3 736 aaPredicted RBP9.21□□□□□ -0.93
TMEM39A-202ENST00000438581 SPATA31A5Q5VU36 1347 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 SPATA31A7Q8IWB4 1347 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 CHGBP05060 677 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 GOLGA8HP0CJ92 632 aa9.21□□□□□ -0.94
TMEM39A-202ENST00000438581 SYCP1Q15431 976 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms