RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 GIMAP6Q6P9H5 292 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 NCCRP1Q6ZVX7 275 aaPredicted RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 SH3TC2Q8TF17 1288 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 GPATCH3Q96I76 525 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 PCMTD1Q96MG8 357 aaPredicted RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 TTC14Q96N46 770 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 NEUROD6Q96NK8 337 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 REPIN1Q9BWE0 567 aaKnown RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 KLC4Q9NSK0 619 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 IFT57Q9NWB7 429 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 CHMP3Q9Y3E7 222 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 DAAM1Q9Y4D1 1078 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 BZW2Q9Y6E2 419 aaKnown RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 GPRASP1Q5JY77 1395 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 CCDC7Q96M83 1385 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 GOLGA3Q08378 1498 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 SKIP12755 728 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 DMPKQ09013 629 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 SNCBQ16143 134 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 CCBE1Q6UXH8 406 aaPredicted RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 CCAR1Q8IX12 1150 aaKnown RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 RETREG2Q8NC44 543 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 TRPC4APQ8TEL6 797 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 EPSTI1Q96J88 318 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 OXCT2Q9BYC2 517 aaPredicted RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 NACAP1Q9BZK3 213 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 AS3MTQ9HBK9 375 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 CD248Q9HCU0 757 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 ZCCHC17Q9NP64 241 aaKnown RBP7.33□□□□□ -1.24
MCF2-205ENST00000437564 NLRP2Q9NX02 1062 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 RTEL1Q9NZ71 1219 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 ZNF148Q9UQR1 794 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 FAM169AQ9Y6X4 670 aa7.33□□□□□ -1.24
MCF2-205ENST00000437564 ABLIM1O14639 778 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 SLC26A4O43511 780 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 HSPA1AP0DMV8 641 aaKnown RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 HSPA1BP0DMV9 641 aaKnown RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 CNGA1P29973 690 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 PIK3CAP42336 1068 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 OXCT1P55809 520 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 CBX3Q13185 183 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 ARHGAP29Q52LW3 1261 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 CCSAPQ6IQ19 270 aaPredicted RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 FOXR1Q6PIV2 292 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 YTHDF3Q7Z739 585 aaKnown RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 SYCP3Q8IZU3 236 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 WDR66Q8TBY9 1149 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 UBXN4Q92575 508 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 USP6NLQ92738 828 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 HVCN1Q96D96 273 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 CDHR1Q96JP9 859 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 SPAG5Q96R06 1193 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 LNPKQ9C0E8 428 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 ARFGAP3Q9NP61 516 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 SLC39A2Q9NP94 309 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 ATXN10Q9UBB4 475 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 ORC3Q9UBD5 711 aaPredicted RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 DDX20Q9UHI6 824 aaKnown RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 ZNF777Q9ULD5 760 aaPredicted RBP7.32□□□□□ -1.24
MCF2-205ENST00000437564 SQORQ9Y6N5 450 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 PPIP5K1Q6PFW1 1433 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 AATKQ6ZMQ8 1374 aa7.32□□□□□ -1.24
MCF2-205ENST00000437564 A6NNZ2 444 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 K7ELQ4 463 aaPredicted RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 ZSCAN12O43309 604 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 SKAP2O75563 359 aaPredicted RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 LUC7L3O95232 432 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 CYP2E1P05181 493 aaPredicted RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 PSMC4P43686 418 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 ITIH3Q06033 890 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 PPIDQ08752 370 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 DRP2Q13474 957 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 TUBB8Q3ZCM7 444 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 EFCAB2Q5VUJ9 269 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 ADALQ6DHV7 355 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 B4GALNT4Q76KP1 1039 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 SUN5Q8TC36 379 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 APPBP2Q92624 585 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 ATP6V0A1Q93050 837 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 TMEM121BQ9BXQ6 578 aaPredicted RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 EIF2AQ9BY44 585 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 UPF3BQ9BZI7 483 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 QTRT2Q9H974 415 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.31□□□□□ -1.24
MCF2-205ENST00000437564 DNAI1Q9UI46 699 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 MKL2Q9ULH7 1088 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 CEP131Q9UPN4 1083 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 LSM1O15116 133 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 DIAPH2O60879 1101 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 EIF4G2P78344 907 aaKnown RBP eCLIP7.31□□□□□ -1.24
MCF2-205ENST00000437564 TMEM62Q0P6H9 643 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 RASA2Q15283 850 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 PABPC1LQ4VXU2 614 aaKnown RBP7.31□□□□□ -1.24
MCF2-205ENST00000437564 KAZNQ674X7 775 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 GALNT17Q6IS24 598 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 SLC15A3Q8IY34 581 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 MSANTD4Q8NCY6 345 aa7.31□□□□□ -1.24
MCF2-205ENST00000437564 FAM71BQ8TC56 605 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms