RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SPDYE5A6NIY4 337 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 TBC1D12O60347 775 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 INPP5BP32019 993 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 INHBEP58166 350 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 ERO1BQ86YB8 467 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 PI4K2BQ8TCG2 481 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 OTUD5Q96G74 571 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 TRIM34Q9BYJ4 488 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 SAGE1Q9NXZ1 904 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 HERC5Q9UII4 1024 aaKnown RBP13.82□□□□□ -0.2
COL28A1-203ENST00000435823 SNCAIPQ9Y6H5 919 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 SALL3Q9BXA9 1300 aa13.82□□□□□ -0.2
COL28A1-203ENST00000435823 ZFYP08048 801 aaPredicted RBP13.81□□□□□ -0.2
COL28A1-203ENST00000435823 HSPA8P11142 646 aaKnown RBP13.81□□□□□ -0.2
COL28A1-203ENST00000435823 TM4SF4P48230 202 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 MAP3K10Q02779 954 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 NUCB1Q02818 461 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 PPATQ06203 517 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 NOL9Q5SY16 702 aaKnown RBP13.81□□□□□ -0.2
COL28A1-203ENST00000435823 CHD1LQ86WJ1 897 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 CRACR2BQ8N4Y2 399 aaPredicted RBP13.81□□□□□ -0.2
COL28A1-203ENST00000435823 RNF186Q9NXI6 227 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 STAP2Q9UGK3 403 aa13.81□□□□□ -0.2
COL28A1-203ENST00000435823 SAP30BPQ9UHR5 308 aaKnown RBP13.81□□□□□ -0.2
COL28A1-203ENST00000435823 PHF20L1A8MW92 1017 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 CTNND1O60716 968 aaKnown RBP13.8□□□□□ -0.2
COL28A1-203ENST00000435823 TRPA1O75762 1119 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 MBD4O95243 580 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 GJA5P36382 358 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 GTF2A2P52657 109 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 LBX1P52954 281 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 PDE1AP54750 535 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 OTUD7BQ6GQQ9 843 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 TTC6Q86TZ1 520 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 FOXP4Q8IVH2 680 aaPredicted RBP13.8□□□□□ -0.2
COL28A1-203ENST00000435823 SCYL3Q8IZE3 742 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 LCORLQ8N3X6 602 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 FSD1Q9BTV5 496 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 ARMT1Q9H993 441 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 PICK1Q9NRD5 415 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 PALD1Q9ULE6 856 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 MYH1P12882 1939 aa13.8□□□□□ -0.2
COL28A1-203ENST00000435823 FAM196BA6NMK8 535 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 RNF113AO15541 343 aaKnown RBP13.79□□□□□ -0.2
COL28A1-203ENST00000435823 ALDH1A1P00352 501 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 PPIL2Q13356 520 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 SLFNL1Q499Z3 407 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 APPBP2Q92624 585 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 DDRGK1Q96HY6 314 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 PRDM10Q9NQV6 1147 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 TSKSQ9UJT2 592 aa13.79□□□□□ -0.2
COL28A1-203ENST00000435823 LAMB1P07942 1786 aa13.78□□□□□ -0.2
COL28A1-203ENST00000435823 NAV1Q8NEY1 1877 aa13.78□□□□□ -0.2
COL28A1-203ENST00000435823 POLR3DP05423 398 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-203ENST00000435823 SLURP2P0DP57 97 aa13.78□□□□□ -0.2
COL28A1-203ENST00000435823 SNAPC2Q13487 334 aa13.78□□□□□ -0.2
COL28A1-203ENST00000435823 IFNL1Q8IU54 200 aa13.78□□□□□ -0.2
COL28A1-203ENST00000435823 EVI5LQ96CN4 794 aa13.78□□□□□ -0.2
COL28A1-203ENST00000435823 PUS7LQ9H0K6 701 aaKnown RBP13.78□□□□□ -0.2
COL28A1-203ENST00000435823 CCL15-CCL14A0A0B4J2E2 113 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 TESPA1A2RU30 521 aaPredicted RBP13.77□□□□□ -0.21
COL28A1-203ENST00000435823 IRF6O14896 467 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 PCNTO95613 3336 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 CHGBP05060 677 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 CETPP11597 493 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 CLCN6P51797 869 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 DOCK1Q14185 1865 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 CCL15Q16663 113 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 SLC4A8Q2Y0W8 1093 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 AMOTL1Q8IY63 956 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 SDR42E1Q8WUS8 393 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 EHD4Q9H223 541 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 DCP1AQ9NPI6 582 aaPredicted RBP13.77□□□□□ -0.21
COL28A1-203ENST00000435823 ATP8A2Q9NTI2 1148 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 MCM9Q9NXL9 1143 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 SERPINB13Q9UIV8 391 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 SLC4A4Q9Y6R1 1079 aa13.77□□□□□ -0.21
COL28A1-203ENST00000435823 SIPA1L1O43166 1804 aa13.76□□□□□ -0.21
COL28A1-203ENST00000435823 PTPRAP18433 802 aa13.76□□□□□ -0.21
COL28A1-203ENST00000435823 METTL16Q86W50 562 aaKnown RBP13.76□□□□□ -0.21
COL28A1-203ENST00000435823 MS4A4AQ96JQ5 239 aa13.76□□□□□ -0.21
COL28A1-203ENST00000435823 ZHX2Q9Y6X8 837 aa13.76□□□□□ -0.21
COL28A1-203ENST00000435823 DDX60LQ5H9U9 1706 aaKnown RBP13.76□□□□□ -0.21
COL28A1-203ENST00000435823 TRIM6-TRIM34B2RNG4 842 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 IGF2BP3O00425 579 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL28A1-203ENST00000435823 CXCL11O14625 94 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 PRKAB2O43741 272 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 GNAT2P19087 354 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 CAP2P40123 477 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 PLEKHM2Q8IWE5 1019 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 BRI3BPQ8WY22 251 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 OSBP2Q969R2 916 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 STRBPQ96SI9 672 aaKnown RBP13.75□□□□□ -0.21
COL28A1-203ENST00000435823 TBC1D2Q9BYX2 928 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 OSBPL3Q9H4L5 887 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 GINM1Q9NU53 330 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 KCNH4Q9UQ05 1017 aa13.75□□□□□ -0.21
COL28A1-203ENST00000435823 ATAD5Q96QE3 1844 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 GPAA1O43292 621 aa13.74□□□□□ -0.21
COL28A1-203ENST00000435823 TBC1D8O95759 1140 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms