RNA–Protein interactions for RNA: ENST00000431390.5

HMGN1-206, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,552 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-206ENST00000431390 KRT23Q9C075 422 aa21.55■■□□□ 1.04
HMGN1-206ENST00000431390 USP40Q9NVE5 1235 aa21.55■■□□□ 1.04
HMGN1-206ENST00000431390 MCM9Q9NXL9 1143 aa21.55■■□□□ 1.04
HMGN1-206ENST00000431390 FLT1P17948 1338 aa21.55■■□□□ 1.04
HMGN1-206ENST00000431390 CDC42EP5Q6NZY7 148 aa21.54■■□□□ 1.04
HMGN1-206ENST00000431390 PAXIP1Q6ZW49 1069 aaPredicted RBP21.54■■□□□ 1.04
HMGN1-206ENST00000431390 FBXL16Q8N461 479 aa21.54■■□□□ 1.04
HMGN1-206ENST00000431390 OGFOD1Q8N543 542 aa21.54■■□□□ 1.04
HMGN1-206ENST00000431390 LIMCH1Q9UPQ0 1083 aa21.54■■□□□ 1.04
HMGN1-206ENST00000431390 SLC3A2P08195 630 aaKnown RBP21.53■■□□□ 1.04
HMGN1-206ENST00000431390 RPS12P25398 132 aaKnown RBP21.53■■□□□ 1.04
HMGN1-206ENST00000431390 MCM5P33992 734 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 RBM5P52756 815 aaKnown RBP eCLIP21.53■■□□□ 1.04
HMGN1-206ENST00000431390 GRM1Q13255 1194 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 MAPKAPK5Q8IW41 473 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 ABHD8Q96I13 439 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 TMX3Q96JJ7 454 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 CAPNS2Q96L46 248 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 NEDD4P46934 1319 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 ROBO3Q96MS0 1386 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 TRAF5O00463 557 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 WDHD1O75717 1129 aaPredicted RBP21.53■■□□□ 1.04
HMGN1-206ENST00000431390 FGRP09769 529 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 USP17L8P0C7I0 530 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 CFAP100Q494V2 611 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 C12orf60Q5U649 245 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 CYP4F22Q6NT55 531 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 TCEANC2Q96MN5 208 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 AGXT2Q9BYV1 514 aa21.53■■□□□ 1.04
HMGN1-206ENST00000431390 ZBTB12Q9Y330 459 aaPredicted RBP21.53■■□□□ 1.04
HMGN1-206ENST00000431390 NT5C2P49902 561 aa21.52■■□□□ 1.04
HMGN1-206ENST00000431390 TOB2Q14106 344 aaPredicted RBP21.52■■□□□ 1.04
HMGN1-206ENST00000431390 Q6ZUG5 572 aa21.52■■□□□ 1.04
HMGN1-206ENST00000431390 USP50Q70EL3 339 aaPredicted RBP21.52■■□□□ 1.04
HMGN1-206ENST00000431390 ZSCAN31Q96LW9 406 aaPredicted RBP21.52■■□□□ 1.04
HMGN1-206ENST00000431390 CYP2D7A0A087X1C5 515 aa21.51■■□□□ 1.03
HMGN1-206ENST00000431390 NPM3O75607 178 aaKnown RBP21.51■■□□□ 1.03
HMGN1-206ENST00000431390 CST9Q5W186 159 aa21.51■■□□□ 1.03
HMGN1-206ENST00000431390 MTMR14Q8NCE2 650 aa21.51■■□□□ 1.03
HMGN1-206ENST00000431390 TACC3Q9Y6A5 838 aa21.51■■□□□ 1.03
HMGN1-206ENST00000431390 B4E1Z4 1266 aa21.5■■□□□ 1.03
HMGN1-206ENST00000431390 PRC1O43663 620 aa21.5■■□□□ 1.03
HMGN1-206ENST00000431390 POLR3DP05423 398 aaPredicted RBP21.5■■□□□ 1.03
HMGN1-206ENST00000431390 ECE1P42892 770 aa21.5■■□□□ 1.03
HMGN1-206ENST00000431390 CUL4AQ13619 759 aa21.5■■□□□ 1.03
HMGN1-206ENST00000431390 NOL8Q76FK4 1167 aaKnown RBP21.5■■□□□ 1.03
HMGN1-206ENST00000431390 MTA3Q9BTC8 594 aa21.5■■□□□ 1.03
HMGN1-206ENST00000431390 IDI2Q9BXS1 227 aa21.5■■□□□ 1.03
HMGN1-206ENST00000431390 SH2B1Q9NRF2 756 aaPredicted RBP21.5■■□□□ 1.03
HMGN1-206ENST00000431390 CYP2D6P10635 497 aa21.49■■□□□ 1.03
HMGN1-206ENST00000431390 ANTXR2P58335 489 aa21.49■■□□□ 1.03
HMGN1-206ENST00000431390 FGD1P98174 961 aa21.49■■□□□ 1.03
HMGN1-206ENST00000431390 DPF2Q92785 391 aa21.49■■□□□ 1.03
HMGN1-206ENST00000431390 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.49■■□□□ 1.03
HMGN1-206ENST00000431390 PCDHAC2Q9Y5I4 1007 aa21.49■■□□□ 1.03
HMGN1-206ENST00000431390 SPDYE2BA6NHP3 402 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 ORC4O43929 436 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 HSP90AA1P07900 732 aaKnown RBP21.48■■□□□ 1.03
HMGN1-206ENST00000431390 SPDYE6P0CI01 402 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 PDE4BQ07343 736 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 DLGAP5Q15398 846 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 TMEM87BQ96K49 555 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 DDX4Q9NQI0 724 aaKnown RBP21.48■■□□□ 1.03
HMGN1-206ENST00000431390 INCENPQ9NQS7 918 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 GPRC5DQ9NZD1 345 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 TLL2Q9Y6L7 1015 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 PICALMQ13492 652 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 CYB5R4Q7L1T6 521 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 ESR2Q92731 530 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 PRMT6Q96LA8 375 aaPredicted RBP21.48■■□□□ 1.03
HMGN1-206ENST00000431390 BEGAINQ9BUH8 593 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 OSBPL5Q9H0X9 879 aaPredicted RBP21.48■■□□□ 1.03
HMGN1-206ENST00000431390 ADARB2Q9NS39 739 aaKnown RBP21.48■■□□□ 1.03
HMGN1-206ENST00000431390 TOMM22Q9NS69 142 aa21.48■■□□□ 1.03
HMGN1-206ENST00000431390 SAP30BPQ9UHR5 308 aaKnown RBP21.48■■□□□ 1.03
HMGN1-206ENST00000431390 SMIM22K7EJ46 135 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 KDM4AO75164 1064 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 ZNF280AP59817 542 aaPredicted RBP21.47■■□□□ 1.03
HMGN1-206ENST00000431390 RRP12Q5JTH9 1297 aaKnown RBP21.47■■□□□ 1.03
HMGN1-206ENST00000431390 CHST3Q7LGC8 479 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 TTC6Q86TZ1 520 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 BRF1Q92994 677 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 INTS4Q96HW7 963 aaKnown RBP21.47■■□□□ 1.03
HMGN1-206ENST00000431390 LRRC2Q9BYS8 371 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 ZSWIM5Q9P217 1185 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 TPCN1Q9ULQ1 816 aa21.47■■□□□ 1.03
HMGN1-206ENST00000431390 PLCD1P51178 756 aa21.46■■□□□ 1.03
HMGN1-206ENST00000431390 ZNF287Q9HBT7 754 aa21.46■■□□□ 1.03
HMGN1-206ENST00000431390 TSKSQ9UJT2 592 aa21.46■■□□□ 1.03
HMGN1-206ENST00000431390 COL2A1P02458 1487 aaPredicted RBP21.45■■□□□ 1.03
HMGN1-206ENST00000431390 AOC2O75106 756 aa21.45■■□□□ 1.02
HMGN1-206ENST00000431390 EVCP57679 992 aa21.45■■□□□ 1.02
HMGN1-206ENST00000431390 EVX2Q03828 476 aa21.45■■□□□ 1.02
HMGN1-206ENST00000431390 NFIAQ12857 509 aa21.45■■□□□ 1.02
HMGN1-206ENST00000431390 STK11IPQ8N1F8 1099 aa21.45■■□□□ 1.02
HMGN1-206ENST00000431390 NKX2-3Q8TAU0 364 aa21.45■■□□□ 1.02
HMGN1-206ENST00000431390 ZBED3Q96IU2 234 aaPredicted RBP21.45■■□□□ 1.02
HMGN1-206ENST00000431390 LARP6Q9BRS8 491 aaKnown RBP21.45■■□□□ 1.02
HMGN1-206ENST00000431390 TDRD3Q9H7E2 651 aaKnown RBP21.45■■□□□ 1.02
HMGN1-206ENST00000431390 TMOD2Q9NZR1 351 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms