RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ABCC1P33527 1531 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 hCG_1642624A0A1W2PR95 340 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 SLC27A2O14975 620 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 ZNF365Q70YC5 407 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 EPSTI1Q96J88 318 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 LPXNO60711 386 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 TGFBRAP1Q8WUH2 860 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 CIB2O75838 187 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 PARP10Q53GL7 1025 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 RAD50Q92878 1312 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 GCNT3O95395 438 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 RLBP1P12271 317 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 CD19P15391 556 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 NOX5Q96PH1 765 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 STIM2Q9P246 746 aa17.17■□□□□ 0.34
PTPRF-206ENST00000429895 GPAA1O43292 621 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 KMT5BQ4FZB7 885 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 VWA3BQ502W6 1294 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 FMNL3Q8IVF7 1028 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 SNX21Q969T3 373 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.16■□□□□ 0.341e-6■■■■□ 19.9
PTPRF-206ENST00000429895 AFG3L2Q9Y4W6 797 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 MAST3O60307 1309 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 DTNBO60941 627 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 TTC38Q5R3I4 469 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 FAM76AQ8TAV0 307 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 RILPL1Q5EBL4 403 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 KCNH3Q9ULD8 1083 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 EBAG9O00559 213 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 PRPF6O94906 941 aaKnown RBP17.16■□□□□ 0.34
PTPRF-206ENST00000429895 DCUN1D2Q6PH85 259 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 SYNRGQ9UMZ2 1314 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 A1BGP04217 495 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 PSMD6Q15008 389 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 ANO1Q5XXA6 986 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 CASC4Q6P4E1 433 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 ZNF790Q6PG37 636 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 IP6K1Q92551 441 aa17.16■□□□□ 0.34
PTPRF-206ENST00000429895 METTL22Q9BUU2 404 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-206ENST00000429895 DDX21Q9NR30 783 aaKnown RBP eCLIP17.16■□□□□ 0.34
PTPRF-206ENST00000429895 RPRD2Q5VT52 1461 aaKnown RBP17.16■□□□□ 0.34
PTPRF-206ENST00000429895 CETN3O15182 167 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 IRX3P78415 501 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 TMEM87BQ96K49 555 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 CTTNBP2NLQ9P2B4 639 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 URB2Q14146 1524 aaKnown RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 XRCC6P12956 609 aaKnown RBP eCLIP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 DNM2P50570 870 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 UBL4BQ8N7F7 174 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 UTP11Q9Y3A2 253 aaKnown RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 PPP2R3AQ06190 1150 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 RNF169Q8NCN4 708 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 SMCR8Q8TEV9 937 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 PHKBQ93100 1093 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 MYO1AQ9UBC5 1043 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 YTHDC2Q9H6S0 1430 aaKnown RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 HERC4Q5GLZ8 1057 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 CEP85LQ5SZL2 805 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 CCDC110Q8TBZ0 833 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 PAGR1Q9BTK6 254 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 MRPL44Q9H9J2 332 aaKnown RBP17.15■□□□□ 0.34
PTPRF-206ENST00000429895 NPATQ14207 1427 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 FAM47CQ5HY64 1035 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 LRWD1Q9UFC0 647 aa17.15■□□□□ 0.34
PTPRF-206ENST00000429895 LRMPQ12912 555 aa17.14■□□□□ 0.34
PTPRF-206ENST00000429895 TCIRG1Q13488 830 aa17.14■□□□□ 0.34
PTPRF-206ENST00000429895 STMN2Q93045 179 aa17.14■□□□□ 0.34
PTPRF-206ENST00000429895 DNM3Q9UQ16 869 aa17.14■□□□□ 0.34
PTPRF-206ENST00000429895 EXOC3O60645 756 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 FAM47AQ5JRC9 791 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 WDR66Q8TBY9 1149 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 GIPC1O14908 333 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 DKC1O60832 514 aaKnown RBP eCLIP17.14■□□□□ 0.339e-7■■■■■ 35.8
PTPRF-206ENST00000429895 CALCRLQ16602 461 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 CCDC125Q86Z20 511 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 NIM1KQ8IY84 436 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 NSMCE1Q8WV22 266 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 FAM227BQ96M60 508 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 ZKSCAN5Q9Y2L8 839 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 CUL4BQ13620 913 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 PAK1Q13153 545 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 C8orf74Q6P047 294 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 RDH13Q8NBN7 331 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 USP26Q9BXU7 913 aa17.14■□□□□ 0.33
PTPRF-206ENST00000429895 ATP5DP30049 168 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 GTF2A1P52655 376 aaPredicted RBP17.13■□□□□ 0.33
PTPRF-206ENST00000429895 CYP26C1Q6V0L0 522 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 SEPT14Q6ZU15 432 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 METTL13Q8N6R0 699 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 PSMB7Q99436 277 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.13■□□□□ 0.33
PTPRF-206ENST00000429895 CUL7Q14999 1698 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 ABCA10Q8WWZ4 1543 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 KCNA6P17658 529 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 NONOQ15233 471 aaKnown RBP eCLIP17.13■□□□□ 0.33
PTPRF-206ENST00000429895 FYB2Q5VWT5 728 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 DIS3L2Q8IYB7 885 aaKnown RBP17.13■□□□□ 0.33
PTPRF-206ENST00000429895 ARFGAP2Q8N6H7 521 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 GSDMBQ8TAX9 411 aa17.13■□□□□ 0.33
PTPRF-206ENST00000429895 ASIC3Q9UHC3 531 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms