RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 KIF23Q02241 960 aaPredicted RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 PPARAQ07869 468 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 TRIM29Q14134 588 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 DHX8Q14562 1220 aaKnown RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 NBPF11Q86T75 865 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 DIS3L2Q8IYB7 885 aaKnown RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 LINC00301Q8NCQ3 95 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 AGXT2Q9BYV1 514 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 RTCBQ9Y3I0 505 aaKnown RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 TNKSO95271 1327 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 LAMA4Q16363 1823 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 ERICH2A1L162 156 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 FAM196BA6NMK8 535 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 C6orf229H3BNL8 230 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 ZNF202O95125 648 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 PFKFB1P16118 471 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 HMGN5P82970 282 aaKnown RBP9.68□□□□□ -0.86
CD44-208ENST00000428726 TGFBRAP1Q8WUH2 860 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 ZNF274Q96GC6 653 aaPredicted RBP9.68□□□□□ -0.86
CD44-208ENST00000428726 ZSCAN16Q9H4T2 348 aaPredicted RBP9.68□□□□□ -0.86
CD44-208ENST00000428726 KIF3AQ9Y496 699 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 CEP350Q5VT06 3117 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 TOM1O60784 492 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 CACNB3P54284 484 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 RTN1Q16799 776 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 ANO1Q5XXA6 986 aa9.68□□□□□ -0.86
CD44-208ENST00000428726 CACTINQ8WUQ7 758 aaKnown RBP9.68□□□□□ -0.86
CD44-208ENST00000428726 CDC5LQ99459 802 aaKnown RBP9.68□□□□□ -0.86
CD44-208ENST00000428726 ERVV-1B6SEH8 477 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 UQCRFS1P1P0C7P4 283 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 SSRP1Q08945 709 aaKnown RBP9.67□□□□□ -0.86
CD44-208ENST00000428726 TTF1Q15361 905 aaPredicted RBP9.67□□□□□ -0.86
CD44-208ENST00000428726 DOK7Q18PE1 504 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 LONRF3Q496Y0 759 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 ZSCAN25Q6NSZ9 544 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 MROH5Q6ZUA9 1318 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 DZIP1Q86YF9 867 aaKnown RBP9.67□□□□□ -0.86
CD44-208ENST00000428726 MRPS27Q92552 414 aaKnown RBP9.67□□□□□ -0.86
CD44-208ENST00000428726 ZNF396Q96N95 335 aaPredicted RBP9.67□□□□□ -0.86
CD44-208ENST00000428726 SCNN1DP51172 638 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 UBE3CQ15386 1083 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 FBXL16Q8N461 479 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 SHISA4Q96DD7 197 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 AK7Q96M32 723 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 NACAP1Q9BZK3 213 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 RCOR1Q9UKL0 485 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 MYH14Q7Z406 1995 aaKnown RBP9.67□□□□□ -0.86
CD44-208ENST00000428726 ANKRD36CQ5JPF3 1778 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 PLCH1Q4KWH8 1693 aa9.67□□□□□ -0.86
CD44-208ENST00000428726 TSPY2A6NKD2 308 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 DHX16O60231 1041 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 ARID4AP29374 1257 aaPredicted RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 HIBADHP31937 336 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 USP5P45974 858 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 ZNF654Q8IZM8 581 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 EPSTI1Q96J88 318 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 IFNKQ9P0W0 207 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 PCDHAC2Q9Y5I4 1007 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 POLR2DO15514 142 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 SLC3A2P08195 630 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 PRR29P0C7W0 189 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 PPP4R3BQ5MIZ7 849 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 SHC4Q6S5L8 630 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 STAG2Q8N3U4 1231 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 CPLX3Q8WVH0 158 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 ZNF512BQ96KM6 892 aaPredicted RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 KCNQ5Q9NR82 932 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 ZNF652Q9Y2D9 606 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 MYH3P11055 1940 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 HSPA1LP34931 641 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 SYKP43405 635 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 AKAP17AQ02040 695 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 IFIT1BQ5T764 474 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 ENAHQ8N8S7 591 aaPredicted RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 DPF2Q92785 391 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 DHX58Q96C10 678 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 BLZF1Q9H2G9 400 aa9.66□□□□□ -0.86
CD44-208ENST00000428726 DDX19AQ9NUU7 478 aaKnown RBP9.66□□□□□ -0.86
CD44-208ENST00000428726 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 FAM160A1Q05DH4 1040 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 TMC6Q7Z403 805 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 FOXP4Q8IVH2 680 aaPredicted RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 SEPT12Q8IYM1 358 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 SH3RF3Q8TEJ3 882 aaPredicted RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 CDCA7Q9BWT1 371 aaPredicted RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 SALL1Q9NSC2 1324 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 TAL1P17542 331 aaPredicted RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 U2AF2P26368 475 aaKnown RBP eCLIP9.65□□□□□ -0.86
CD44-208ENST00000428726 MCM7P33993 719 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 PLCD1P51178 756 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 NTRK3Q16288 839 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 SHROOM1Q2M3G4 852 aaPredicted RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 CTR9Q6PD62 1173 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 CPLX2Q6PUV4 134 aaKnown RBP9.65□□□□□ -0.86
CD44-208ENST00000428726 TPTE2Q6XPS3 522 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 ZNF710Q8N1W2 664 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 FANCBQ8NB91 859 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 GJA10Q969M2 543 aa9.65□□□□□ -0.86
CD44-208ENST00000428726 NUP98P52948 1817 aa9.65□□□□□ -0.87
CD44-208ENST00000428726 TMEM232C9JQI7 657 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms