RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 CNTNAP3Q9BZ76 1288 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 AMBRA1Q9C0C7 1298 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MROH2BQ7Z745 1585 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PCNX1Q96RV3 2341 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SPATA31A3Q5VYP0 1347 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MYO3BQ8WXR4 1341 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SKIP12755 728 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 GCLCP48506 637 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PICALMQ13492 652 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 BYSLQ13895 437 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ANO1Q5XXA6 986 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 KCNN1Q92952 543 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CFAP36Q96G28 342 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 FBXL18Q96ME1 805 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 TBC1D2Q9BYX2 928 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SEMA6BQ9H3T3 888 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 NDRG2Q9UN36 371 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 AXIN2Q9Y2T1 843 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 RWDD3Q9Y3V2 267 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CEP83Q9Y592 693 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 NEO1Q92859 1461 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ADGRB2O60241 1585 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF518AQ6AHZ1 1483 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MOXD2PA6NHM9 499 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 WDR46O15213 610 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 RPS6KA4O75676 772 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 APPP05067 770 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 FDX1P10109 184 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ESRRAP11474 423 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MYL6BP14649 208 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CD72P21854 359 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SIM1P81133 766 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CSTF1Q05048 431 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 TRIM26Q12899 539 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 IKBKEQ14164 716 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 RSPO4Q2I0M5 234 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ANKRD45Q5TZF3 282 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 OTOP3Q7RTS5 596 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 KDELC2Q7Z4H8 507 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CCDC83Q8IWF9 413 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF341Q9BYN7 854 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 RAI14Q9P0K7 980 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SRRDQ9UH36 339 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 OTOGLQ3ZCN5 2332 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CDK12Q9NYV4 1490 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PALLDQ8WX93 1383 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PI4K2BG5E9Z4 385 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MEN1O00255 615 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 KCNK3O14649 394 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ZW10O43264 779 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 GABBR2O75899 941 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SFTPCP11686 197 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 RXRAP19793 462 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PLCD1P51178 756 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 RIPPLY3P57055 190 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 CREB5Q02930 508 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SCARF1Q14162 830 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 AMOTQ4VCS5 1084 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 IQCEQ6IPM2 695 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ATG14Q6ZNE5 492 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SAPCD2Q86UD0 394 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF354CQ86Y25 554 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF579Q8NAF0 562 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 PI4K2BQ8TCG2 481 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 EDC3Q96F86 508 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 FMNL2Q96PY5 1086 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SUCOQ9UBS9 1254 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 SUGT1Q9Y2Z0 365 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 KIAA0586Q9BVV6 1533 aa3.27□□□□□ -1.89
CCDC88A-205ENST00000426576 MROH7-TTC4A0A0A0MT08 1334 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 TMEM221A6NGB7 291 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 C2orf71A6NGG8 1288 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 M0R296 226 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 LAD1O00515 517 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 MAPK8P45983 427 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 AAMPQ13685 434 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 DCTN1Q14203 1278 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ZSCAN23Q3MJ62 389 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 VARS2Q5ST30 1063 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 RBM23Q86U06 439 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 SPATA5Q8NB90 893 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 MIR1-1HGQ9H1L0 117 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 SLC24A3Q9HC58 644 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 C9orf78Q9NZ63 289 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 IPO11Q9UI26 975 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 PLEKHH2Q8IVE3 1493 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ADM5C9JUS6 153 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 TBC1D12O60347 775 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 BBOX1O75936 387 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 IFIT1P09914 478 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 CCL23P55773 120 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 GPM6BQ13491 265 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 WDR43Q15061 677 aaKnown RBP eCLIP3.26□□□□□ -1.895e-6■□□□□ 10.7
CCDC88A-205ENST00000426576 CCDC57Q2TAC2 916 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 C6orf118Q5T5N4 469 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 TTLL5Q6EMB2 1281 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ABHD5Q8WTS1 349 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 FAM163AQ96GL9 167 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 NECAB3Q96P71 396 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 TMPRSS4Q9NRS4 437 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms