RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ERICH2A1L162 156 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 IMPDH2P12268 514 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SEPT6Q14141 434 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 APBB1IPQ7Z5R6 666 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 RIN2Q8WYP3 895 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 FAM53CQ9NYF3 392 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 HIP1O00291 1037 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MEFVO15553 781 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MAP3K9P80192 1104 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 TOGARAM2Q6ZUX3 1019 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 KIF2BQ8N4N8 673 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SHROOM2Q13796 1616 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 NDUFB5O43674 189 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MCM3P25205 808 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 TUFMP49411 452 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 A0A1B0GVL5 298 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 Q6ZUG5 572 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ECT2Q9H8V3 914 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SLC3A2P08195 630 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 TMEM154Q6P9G4 183 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 RALYLQ86SE5 291 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MFN1Q8IWA4 741 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC13Q8IYE1 715 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SAFBQ15424 915 aaKnown RBP eCLIP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC129Q6ZRS4 1044 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 IFT140Q96RY7 1462 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 C21orf2O43822 256 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 RPS6KA5O75582 802 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 HIP1RO75146 1068 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 BZW1Q7L1Q6 419 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 LRRC43Q8N309 656 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 RNF10Q8N5U6 811 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SIL1Q9H173 461 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MOSPD1Q9UJG1 213 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 F8VZ95 297 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SLC5A9Q2M3M2 681 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 TTC22Q5TAA0 569 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 NCAPG2Q86XI2 1143 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 CDC5LQ99459 802 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SCAND2PQ9GZW5 306 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 RASAL2Q9UJF2 1139 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 TRIM43BA6NCK2 446 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 PEX14O75381 377 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 GJC2Q5T442 439 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 DLGAP2Q9P1A6 1054 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 PARD3Q8TEW0 1356 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 NFKBIAP25963 317 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 PIP4K2AP48426 406 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 CBX3Q13185 183 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ZNF280DQ6N043 979 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 NUDCD1Q96RS6 583 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ANKS4BQ8N8V4 417 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ZNF202O95125 648 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 P3H1Q32P28 736 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 WDR78Q5VTH9 848 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 PLA2G4DQ86XP0 818 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SH2D3CQ8N5H7 860 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SEL1LQ9UBV2 794 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SGSM2O43147 1006 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SEC24CP53992 1094 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 VSNL1P62760 191 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 OLFML2BQ68BL8 750 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 FSD1Q9BTV5 496 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 NUP58Q9BVL2 599 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 BLMP54132 1417 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 RTN2O75298 545 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 TMED10P49755 219 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ROR2Q01974 943 aaKnown RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 VPS53Q5VIR6 699 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 PLEKHM2Q8IWE5 1019 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ADKP55263 362 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TAF4BQ92750 862 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SLF1Q9BQI6 1058 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SYNMO15061 1565 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SRGAP1Q7Z6B7 1085 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SELENOSQ9BQE4 189 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 KANK3Q6NY19 840 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TRPC6Q9Y210 931 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 NPC1L1Q9UHC9 1359 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 MBD4O95243 580 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 LMNB1P20700 586 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SMCR8Q8TEV9 937 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 AMPHP49418 695 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 IL16Q14005 1332 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 UBTFL1P0CB47 393 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TBL3Q12788 808 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GPIHBP1Q8IV16 184 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 KSR1Q8IVT5 923 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 RANBP17Q9H2T7 1088 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 MAPK8IP1Q9UQF2 711 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 TCOF1Q13428 1488 aaKnown RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 RFC1P35251 1148 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ANKRD36BQ8N2N9 1353 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 FAM133AQ8N9E0 248 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 SPG7Q9UQ90 795 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 B4DLN1 442 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 GNAI3P08754 354 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 ATP4AP20648 1035 aa3.8□□□□□ -1.8
SYNE1-212ENST00000423061 MRPL12P52815 198 aaKnown RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms