RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TEX2Q8IWB9 1127 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 IGSF22Q8N9C0 903 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 AFAP1L1Q8TED9 768 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 NEUROD6Q96NK8 337 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 NAPGQ99747 312 aaPredicted RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 HOOK1Q9UJC3 728 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 FGAP02671 866 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 CASP7P55210 303 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 TIMM10P62072 90 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 DNAJC21Q5F1R6 531 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 SPECC1Q5M775 1068 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 LRP10Q7Z4F1 713 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 KRI1Q8N9T8 703 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 TRIML1Q8N9V2 468 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 DEF6Q9H4E7 631 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 GPR108Q9NPR9 543 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 TTF2Q9UNY4 1162 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 AFDNP55196 1824 aaKnown RBP12.18□□□□□ -0.46
USP54-204ENST00000422491 ECM29Q5VYK3 1845 aa12.18□□□□□ -0.46
USP54-204ENST00000422491 ADAMTS7Q9UKP4 1686 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 A0A087WUV0 522 aaPredicted RBP12.17□□□□□ -0.46
USP54-204ENST00000422491 SWT1Q5T5J6 900 aaKnown RBP12.17□□□□□ -0.46
USP54-204ENST00000422491 MMS22LQ6ZRQ5 1243 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 STK11IPQ8N1F8 1099 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 NCOA7Q8NI08 942 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 ERCC5P28715 1186 aaPredicted RBP12.17□□□□□ -0.46
USP54-204ENST00000422491 ARHGAP25P42331 645 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 PLCD1P51178 756 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 ANKRD13DQ6ZTN6 518 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 PPFIBP1Q86W92 1011 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 ACRBPQ8NEB7 543 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 CTCFLQ8NI51 663 aaPredicted RBP12.17□□□□□ -0.46
USP54-204ENST00000422491 SPATA20Q8TB22 786 aa12.17□□□□□ -0.46
USP54-204ENST00000422491 ADD3Q9UEY8 706 aaKnown RBP12.17□□□□□ -0.46
USP54-204ENST00000422491 PHRF1Q9P1Y6 1649 aaKnown RBP12.16□□□□□ -0.46
USP54-204ENST00000422491 IFIT1P09914 478 aaKnown RBP12.16□□□□□ -0.46
USP54-204ENST00000422491 EIF5P55010 431 aaKnown RBP12.16□□□□□ -0.46
USP54-204ENST00000422491 GRIN1Q05586 938 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 SART3Q15020 963 aaKnown RBP12.16□□□□□ -0.46
USP54-204ENST00000422491 CPLX3Q8WVH0 158 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 SEC31BQ9NQW1 1179 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 MYO1AQ9UBC5 1043 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 SERTAD1Q9UHV2 236 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 SHOX2O60902 331 aaPredicted RBP12.16□□□□□ -0.46
USP54-204ENST00000422491 LMBR1LQ6UX01 489 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 HPCAL4Q9UM19 191 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 TMEM94Q12767 1356 aa12.16□□□□□ -0.46
USP54-204ENST00000422491 CDHR2Q9BYE9 1310 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 LMTK3Q96Q04 1460 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 POLR2DO15514 142 aaKnown RBP12.15□□□□□ -0.46
USP54-204ENST00000422491 GYPCP04921 128 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 CASP14P31944 242 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 MCTP2Q6DN12 878 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 NCAPH2Q6IBW4 605 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 RALYLQ86SE5 291 aaKnown RBP12.15□□□□□ -0.46
USP54-204ENST00000422491 C14orf37Q86TY3 774 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 GRAMD1CQ8IYS0 662 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 MYO6Q9UM54 1294 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 A0A087WZG4 1122 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 CDKL5O76039 1030 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 METAP2P50579 478 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP54-204ENST00000422491 FXR1P51114 621 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP54-204ENST00000422491 ERVK-24P63145 666 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 ZNF790Q6PG37 636 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 PHKBQ93100 1093 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 CCDC51Q96ER9 411 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 CEP89Q96ST8 783 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 FBXO2Q9UK22 296 aaPredicted RBP12.15□□□□□ -0.46
USP54-204ENST00000422491 SLIT3O75094 1523 aa12.15□□□□□ -0.46
USP54-204ENST00000422491 EXOC5O00471 708 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 ACTN4O43707 911 aaKnown RBP12.14□□□□□ -0.47
USP54-204ENST00000422491 PTPREP23469 700 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 MMP14P50281 582 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 USP14P54578 494 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 FOXO4P98177 505 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 SLC39A6Q13433 755 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 CDKAL1Q5VV42 579 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 CNGA4Q8IV77 575 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 NKX2-3Q8TAU0 364 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 KAT2BQ92831 832 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 ESF1Q9H501 851 aaKnown RBP12.14□□□□□ -0.47
USP54-204ENST00000422491 WWC3Q9ULE0 1092 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 ANGEL1Q9UNK9 670 aaKnown RBP12.14□□□□□ -0.47
USP54-204ENST00000422491 KDM6AO15550 1401 aaPredicted RBP12.14□□□□□ -0.47
USP54-204ENST00000422491 RXRAP19793 462 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 TOB1P50616 345 aaPredicted RBP12.14□□□□□ -0.47
USP54-204ENST00000422491 E2F4Q16254 413 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 NTRK3Q16288 839 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 SPATA1Q5VX52 437 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 MICALL1Q8N3F8 863 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 CCDC148Q8NFR7 591 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP54-204ENST00000422491 FAM107BQ9H098 131 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 DNAJC5Q9H3Z4 198 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 DENND2AQ9ULE3 1009 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 ARFGEF2Q9Y6D5 1785 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 ITIH6Q6UXX5 1313 aa12.14□□□□□ -0.47
USP54-204ENST00000422491 ATP5J2-PTCD1G3V325 749 aa12.13□□□□□ -0.47
USP54-204ENST00000422491 RANBP6O60518 1105 aaKnown RBP12.13□□□□□ -0.47
USP54-204ENST00000422491 PTCD1O75127 700 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 546.6 ms